Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq251 107 1e-18 seq986 86.0 5e-12 >seq251 Length=2698768 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | || || | ||| | |||||||||||| || | ||||| ||||| Sbjct 662033 CCTCCGCGGAGACGCAAAACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 661974 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 661973 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGCGGG 661914 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| | ||| || ||| | ||| || Sbjct 661913 ATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCAACC 661854 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || | ||| |||||||| || ||||| Sbjct 661853 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 661807 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | || || | ||| | |||||||||||| || | ||||| ||||| Sbjct 662489 CCTCCGCGGAGACGCAAAACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 662430 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 662429 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGCGGG 662370 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| | ||| || ||| | ||| || Sbjct 662369 ATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCAACC 662310 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || | ||| |||||||| || ||||| Sbjct 662309 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 662263 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||| ||| | |||||||||||| || | |||||| ||||| Sbjct 662945 CCTCCACGGAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAA 662886 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| || || ||||| || ||||| ||||| ||||| | || Sbjct 662885 AGAGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 662826 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| | ||| ||||| | |||||| Sbjct 662825 ATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATGGTGTCAGATGGCTCGACT 662766 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| || ||||| || || || || |||||| Sbjct 662765 TCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 662718 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||| ||| | |||||||||||| || | |||||| ||||| Sbjct 664085 CCTCCACGAAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAA 664026 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| || || ||||| || ||||| ||||| ||||| | || Sbjct 664025 AGAGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 663966 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || | | | |||||| | |||||| Sbjct 663965 ATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTCTCGATAGTGTCGGATGGCTCGACT 663906 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || ||||| || || || || ||||| Sbjct 663905 TCAAGTGTGATGGTCTTACCAGTCAGAGTCTTGACGAAGATCTGCAT 663859 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||| ||| | |||||||||||| || | ||||| ||||| Sbjct 664313 CCTCCACGGAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 664254 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| || || ||||| || ||||| ||||| ||||| | || Sbjct 664253 AGGGTACGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 664194 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| | ||| || ||| | ||| || Sbjct 664193 ATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGATGGCTCAACC 664134 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| ||||| || || || || ||||| Sbjct 664133 TCCAGGGTGATGGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 664087 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 42920 CCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAA 42979 |||| || || ||||||||||||| | ||| | || |||| |||||||| || || | Sbjct 659732 CCTTCTGGACGTTGTAATCGGACAGGGCACGGCCATCTTCCAGCTGTTTGCCAGCGAAGA 659673 Query 42980 TCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGA--CTCT 43037 ||| ||||||||||| | || | |||||| || || |||| | |||| ||| Sbjct 659672 TCAGGCGCTGTTGATCTGGAGGGATACCTTCCTTATCCTCGATCTTGCCCTTGATGTTCT 659613 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | ||||| | || || || || | || || ||||| ||||| ||||| ||||| Sbjct 659612 G--GATGGTGTCTACGGCTTCAACATCCAAGGTGATGGTTTTACCGGTCAGAGTCTTCAC 659555 Query 43098 AAAAATTTGCATTTTCTT 43115 || || ||||| || || Sbjct 659554 GAAGATCTGCATATTGTT 659537 >seq986 Length=4314454 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||| ||||| || ||||| || | ||||| || ||| Sbjct 1408486 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1408427 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | ||||| || || || |||| || |||||||| | || Sbjct 1408426 AGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408367 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | | | ||||| || |||||| Sbjct 1408366 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACC 1408307 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || ||||| ||||||||||| ||||| Sbjct 1408306 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCAT 1408260 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||| ||||| || ||||| || | ||||| || ||| Sbjct 1408942 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1408883 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | ||||| || || || |||| || |||||||| | || Sbjct 1408882 AGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408823 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | | | ||||| || |||||| Sbjct 1408822 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACC 1408763 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || ||||| ||||||||||| ||||| Sbjct 1408762 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCAT 1408716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381347489739906