Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4280 446 2e-120 seq98 150 2e-31 seq4600 131 2e-25 seq4284 100 4e-16 >seq4280 Length=912600 Score = 446 bits (494), Expect = 2e-120 Identities = 881/1293 (68%), Gaps = 19/1293 (1%) Strand=Plus/Minus Query 71375 ATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATG 71434 |||| | ||| || ||||| | || || |||||||| | |||||| || || ||||| | Sbjct 357174 ATCCCGGATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGG 357115 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAA 71494 | ||||| || || |||||||| || | || ||| || | ||| ||||| ||| || Sbjct 357114 CACCATAGTAGATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGT 357055 Query 71495 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 | |||||| | | ||| || || || || | ||| || || || || ||||| || | Sbjct 357054 AAGGATAACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGC 356995 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 71614 ||| | | |||| || | || ||||| | ||||| ||||||| || || |||| Sbjct 356994 GGTGGCGCATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTT 356935 Query 71615 TATTGAGATTTCT---GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC 71671 | |||||||| | | | ||| |||| | || || || ||||| | |||||| || Sbjct 356934 TGTTGAGATTCTTAGTGGCAATT--TTTG-CTACTTCTTTCAGTTTTTGGAAATCATATG 356878 Query 71672 TCCCATC---TATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCT 71728 || || | | || |||| |||||| || | || || || |||||||| || | | Sbjct 356877 TCTTGTCGGGTTTCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTT 356818 Query 71729 CAT--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCC 71786 ||| | | | || |||| | |||||| |||||||| || |||||||||||||| Sbjct 356817 CATCCTTGGA--GGAGTATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCC 356760 Query 71787 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACC 71846 | || || |||||||| || |||| || ||||||||||| || || ||||| ||| Sbjct 356759 GATGTTCTGCTGATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACC 356700 Query 71847 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTT 71906 ||||| | || || || || || || ||| | || | || || | | | | Sbjct 356699 GGTTTCCACTTGGGACTCGATGATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAAT 356640 Query 71907 GTATC-TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965 ||||| || || | ||| ||||| ||| || | | ||| ||||| || ||||| | | Sbjct 356639 GTATCGTCCTTCCGCTT-CGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATGTGT 356581 Query 71966 TGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTC 72025 | || ||||||||||||| || |||||||| |||| ||| | | | | | |||| Sbjct 356580 CGGATAGCCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTC 356521 Query 72026 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCT 72085 | ||||| || | ||| ||||||||||| || || | || |||| || || | Sbjct 356520 GCTTCATGAACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTT 356461 Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 | || || ||||| || | ||| |||||| | | || ||| |||||||||||| | Sbjct 356460 CAGCGCCGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGA 356401 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 || ||||| | | || ||||| ||||| ||||||||||| | ||| | || |||| Sbjct 356400 GATAAATGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGT 356341 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 |||| || || |||||||| ||||| | ||| ||||| || || || || | || | Sbjct 356340 TATTGTACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGT 356281 Query 72266 AGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 || |||| | || | || | || ||| | | || ||||| || ||| ||| || Sbjct 356280 AGGTTCCCTTTGCTCTGATGCAATGAACATTCA--GGCCGATTCCTCCAGCCGATTTCGA 356223 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 72383 || || || || | || || || || ||||| ||||| || || || || ||||| | Sbjct 356222 AATCAACGCACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGT 356163 Query 72384 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 72443 | || || ||| |||| || | || | || |||| ||| | || || || Sbjct 356162 CAACAGGAAGCAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGA 356103 Query 72444 AGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC 72503 ||| || || || || | || ||||| | ||||||||||||||| || | || ||||| Sbjct 356102 AGCATGAGTGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATC 356043 Query 72504 CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTT 72563 || ||||| | || || ||||| ||||| ||||| || | ||| |||||||| Sbjct 356042 TTCGCCGTGGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTT 355983 Query 72564 GTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 72623 | || || || | ||| || ||| ||||| || || || || |||||||| || Sbjct 355982 GCCTTTGATCTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCC 355923 Query 72624 AAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 |||||| || |||||||| ||| ||||||| || Sbjct 355922 AAAGTCCCGATCGTAAATGATAGCCGAATTCAG 355890 >seq98 Length=5729030 Score = 150 bits (166), Expect = 2e-31 Identities = 362/543 (67%), Gaps = 5/543 (1%) Strand=Plus/Plus Query 42101 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATA 42160 || ||||||| ||| || || || || ||| | || |||||||| || | |||| || Sbjct 2603495 ATCAATTCGTAGGAGAATGTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATG 2603554 Query 42161 GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 42220 || || || |||| ||||| ||| |||| || | || ||||| | | | ||| Sbjct 2603555 GATGCGAAACTTCCACTGAAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCT 2603614 Query 42221 CCATAACCGGCACTGT--CATGTAT-CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 42277 || | ||| | | | || || ||| || | | | || || ||||| || ||| Sbjct 2603615 CCGAAGTTGGCCTTTTTGCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACA 2603674 Query 42278 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAT 42337 || |||| | || |||||||| || | || | ||| || ||| || ||| Sbjct 2603675 CAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAA 2603734 Query 42338 GTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCG 42397 |||||||| | || |||||||| || | |||||| || ||||| |||||||| Sbjct 2603735 GTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCA 2603794 Query 42398 TAGAAACATCTGGCCTCGGTAACCTGTA-CTTCTGTACAAAATCGTTCAGCTAAATTTTC 42456 ||||| || | |||||||| ||||| | || ||| ||| ||||| | | || || Sbjct 2603795 TAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA-CGTTCCACGAGGTTCTC 2603853 Query 42457 GTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 42516 ||||| | || || || |||| || |||||||||||| || || | || || Sbjct 2603854 GTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTC 2603913 Query 42517 GTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGT 42576 | | | | | || | |||||| | ||||||||| | ||| ||||| |||| || Sbjct 2603914 GCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGT 2603973 Query 42577 CCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 ||| | ||||| ||||||| || ||||| | ||| || ||||||| || || ||||| Sbjct 2603974 CCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAA 2604033 Query 42637 AAT 42639 ||| Sbjct 2604034 AAT 2604036 >seq4600 Length=436310 Score = 131 bits (144), Expect = 2e-25 Identities = 259/381 (68%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 42260 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 42319 || || ||||| || ||||| |||| | || |||||||| || | || | ||| Sbjct 110435 TCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGT 110494 Query 42320 TTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCA 42379 || ||| || ||| |||||||| | || |||||||| || | |||||| Sbjct 110495 TTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCC 110554 Query 42380 ATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA-CTTCTGTACAAAA 42438 || || || |||||||| ||||| || | |||||||| ||||| | || ||| ||| Sbjct 110555 ATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA 110614 Query 42439 TCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 42498 ||||| | | || ||||||| | || || || |||| || ||||||||||| Sbjct 110615 -CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATG 110673 Query 42499 TTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATAT 42558 | || || | || ||| | | | | || | |||||| | ||||||||| | Sbjct 110674 TGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAG 110733 Query 42559 ATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 ||| ||||| |||| ||||| | ||||| ||||||| || ||||| | ||| || | Sbjct 110734 ATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCC 110793 Query 42619 ATGATATTGAATTGGGAAAAT 42639 |||||| || || |||||||| Sbjct 110794 ATGATACTGGATGGGGAAAAT 110814 >seq4284 Length=891408 Score = 100 bits (110), Expect = 4e-16 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || | ||||| || || || |||||||||||||| || | || ||| Sbjct 84809 TACATTTCACTGTGGACATTTTCCATTGCAATTTGAAATCCGTAGAAGCAACGCGCTTCG 84750 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || ||||| || || | || ||||| | | || |||||||| || || || Sbjct 84749 GTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTCTCGTTCACGATGCCATCGGAA 84690 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATT 42534 || ||||| || |||| |||||| || || | || ||| |||| || | || | Sbjct 84689 GCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTCTCG-CCGGACTTGAGCTTTTC 84631 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 |||||| | ||||||||| | ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 84630 CCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACTGTCCAGAAAGATGCCTCTGC 84571 Query 42595 CT 42596 || Sbjct 84570 CT 84569 Score = 89.7 bits (98), Expect = 7e-13 Identities = 272/416 (65%), Gaps = 7/416 (2%) Strand=Plus/Minus Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 || |||||| || | |||||| ||||| ||| | ||||||||||| || | || Sbjct 85540 CAGTCTATCAGCCACGAATTCAATATACTGCGACATAAGGTCACAATTCATGCCAAGCAG 85481 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | ||| ||||| || || || || || ||||| || ||| || || ||||| Sbjct 85480 GTCAACCGGAAGGGCTTTCGTCAGGAACTCCTGTTCGATCAGGACTGCTTCGCGGATAAT 85421 Query 42013 A--GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 |||| || ||||| ||| | | | || ||| ||||| | ||| || Sbjct 85420 CTCGATCACACG--TTCTTGTGATGGTTTCTGTACCAGATATTTGAACATAAGACAAGCA 85363 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || || |||||| || || || | || ||||||||||| || || || || ||| Sbjct 85362 AAGTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGGC 85303 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 || || |||||||| || | |||||| || || || || |||| |||||| || ||| Sbjct 85302 ATCAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACCT 85243 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATG-TATCCAC 42247 || || || || ||||| | | | ||||| | ||| | | | || ||||| Sbjct 85242 TCCACGGCGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTGCTTGAAATCCAG 85183 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 || ||||| || || ||||| || ||||| |||| | || ||||| || || Sbjct 85182 TTCAATGCCCAGTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCGTTGAA 85127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671099292385320