Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq58 230 3e-55 seq98 141 1e-28 seq4280 140 5e-28 seq4284 132 7e-26 seq73 93.3 6e-14 seq189 86.0 9e-12 >seq58 Length=3045158 Score = 230 bits (254), Expect = 3e-55 Identities = 323/454 (71%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278 ||||| || |||||||| | ||| || | ||| || |||||||||| ||||| ||| Sbjct 1032755 ATGTGAGCCATATCGGCAAACAGGAATGCACCGTTGGCGTCGGCAATCTGGCGGAAGCGT 1032696 Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 | ||||| |||| ||| | |||||| | | ||||| ||||| | | | || ||||| Sbjct 1032695 TTGTAGTCTAAGCACCGGGAATAGCACGAGATTCCGGCGATGATGATCTTGGGCTTGAAG 1032636 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 ||||| ||||| | |||||| | ||||||| || || ||| |||||||||||| Sbjct 1032635 TTCTTGGCGCTCTCCTCCAGTTTGTCGTAGTCGATCAGGCCCGTCACCGGATCCACCTTG 1032576 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTGCG-----GAAT 127446 || |||||||| ||||| |||| || || ||||| | || ||| |||| Sbjct 1032575 TAGGGCATGCTCTCGAAGAAGATCGACGTGGCGGAGATTTTCTTGGTGGCGGTCATGAAT 1032516 Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 |||||||||| |||||| || || ||||| || || |||||||| | ||||||||||| Sbjct 1032515 CCGTGCGTCAAGTGGCCACCATCAGGCAGGTCCAGGCCCATGATGCGACCGTGCGGTTCG 1032456 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | | ||| ||||| ||||||||||||||| ||| || |||||||| || || Sbjct 1032455 ATCAGTCCGGTGTAGACGGCAAAGTTGGCCGGCGAACCGGAGTACGGCTGCACGTTGCAG 1032396 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 |||||||| | ||| | | | ||| ||| || | ||| || |||| |||| Sbjct 1032395 CCCCATTCATCCGGGTTGAGGCGGTATGCTTCGAGGGCACGTTTCTGCGCCAGCAATTCG 1032336 Query 127627 ATGCGATCGATAAACTCGTTACCACCATAGTATC 127660 || ||||| || ||||| ||||| ||||||| Sbjct 1032335 ATCTCGTCGATGAATTCGTTGCCACCGTAGTATC 1032302 Score = 87.8 bits (96), Expect = 3e-12 Identities = 280/428 (65%), Gaps = 10/428 (2%) Strand=Plus/Minus Query 126654 AATCTC--TCGAGCCAATTTCAGAGCACGATCAATGTAGTCTACGA--TGCGTTCAATGT 126709 |||||| |||| || |||||| | ||||| ||| |||| || | || || || | Sbjct 1033461 AATCTCCTTCGA--CAGTTTCAGTCCCCGATCGATGAAGTCCACCACATGGGTC--ATAT 1033406 Query 126710 CACACTCTTTGACACCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTC 126769 || |||| | ||| |||||||||| ||| || ||||| | | ||| ||| || Sbjct 1033405 CAGACTCCACCAAACCTCGGGTCGTCAACGCCGGCGTACCCAACCGGATTCCGGACGGGT 1033346 Query 126770 TGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGA 126829 | || || |||||||||||||| || || || |||||||| || || | || | Sbjct 1033345 TCAGTGCACTCTTGTCTCCGGGAACGGTATTCTTGTTGCAGGCAATGGAAATCTCCTCCA 1033286 Query 126830 GGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGAT 126889 ||| | ||| || | ||||| | || || | ||| | ||||| | | ||||| Sbjct 1033285 GGACGTACTCCGCACGGGCTCCGGTGATGCCAGCCGGGCGAAGGTCCACCAACACCAGAT 1033226 Query 126890 GCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCTGC-CAAC 126948 | |||||||| || || || | | || |||||| || | || |||| ||| || Sbjct 1033225 GAACATCGGTTCCCCCGGTCGAAATGGAGTAGCCCCGCTCGAGCAGACCCT-TGCACAGG 1033167 Query 126949 AACTGTGCATTTCGCACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGG 127008 ||||| || || | | || | |||||| | ||||| | || |||||| Sbjct 1033166 GCTTGTGCGTTACGGATGATCTGTGTCTGGTAGTCTTTGAACTCGGGCGTCCGGGCCTGC 1033107 Query 127009 TGCATTGCGGTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGA 127068 |||| ||||| || | ||||| | ||| ||||| ||||| || || | || || Sbjct 1033106 AGCATGCACGTGGCAATACCGGCAATGGCGTGGTTGTGTGGTCCTCCCTGGATTCCGGGG 1033047 Query 127069 AACACGGC 127076 ||||| || Sbjct 1033046 AACACAGC 1033039 >seq98 Length=5729030 Score = 141 bits (156), Expect = 1e-28 Identities = 570/882 (65%), Gaps = 32/882 (4%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| |||||||| ||||||| | ||||| || |||| |||| || | ||| Sbjct 2604033 TTCCCCATCCAGTATCATGGCATTTGGCAGATGTAGAAGTAGGCAGAGGCATCTCTCTGG 2603974 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA--CTC--GTTTGAC 125113 || | || || |||||||| || || || || ||||||||| | ||| || | | Sbjct 2603973 ACAATAGAGGAAGTCGATCTCTCTAAAGATCTAGCCGATTGGGAAAAGCTCAAGTCAGGC 2603914 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || | ||| | || || || || | ||||||||||||| || |||||||| | Sbjct 2603913 -GAGA---AGC---ACTTCATCTCACATGTATTGGCCTTCTTTGTCGCTTCCGATGGCAG 2603861 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCG 125231 | | ||||| || || || ||| ||| || ||| | ||| || |||| Sbjct 2603860 CATGAACGAGAACCTCGTGGAACGTTTCAGCCAGGAGCT--CCAGGTCACCGAGGCACGT 2603803 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| || ||||| ||||| || || ||||| ||| ||||||||||| || Sbjct 2603802 TGCTTCTATGGATTTCAAATGGCAATGGAAAACGTCCACAGTGAAATGTACTCGCTGCTT 2603743 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACA-TGCTCTTT-AACGCAATCGACA 125349 || || | || ||||| ||| | ||| ||| | | || || || || ||||| | Sbjct 2603742 ATCGATACTTATATTCGTGATTCCAAAC--AAAGGGAGTACTTGTTCAATGCCATCGATA 2603685 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA-TCGATGACGACAAG 125408 |||| | | | || || ||| ||| | | |||| | | | | | ||| Sbjct 2603684 ATCTGCCCTGTGTGAAGAAGAAAGCTGAATAGACATTGAACTGGAATTCAAG-CAAAAAG 2603626 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | | || || | | || || ||||||| || || | || ||||| || Sbjct 2603625 GCCAACTTCGGAGAACGCGTCGTAGCCTTCGCCGTTGTGGAAGAAATTTTCTTCAGTGGA 2603566 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||||| || ||||| |||| | |||||||| ||||| | ||| || || || | Sbjct 2603565 AGTTTCGCATCCATCAATTGGTTGAAGAAGCGTGGACTGACGCCTGGGCTAACATTCTCC 2603506 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 |||| || || || || ||||| ||||| ||| || |||| ||| |||| | Sbjct 2603505 TACGAATTGATCTCACGTGACGAAGGCCTGCACATGGAATTTGTTTCTCTTATGTT---C 2603449 Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGCG-ATGAAAAGGTCATCAACATTGTAACCGA 125647 || |||||| || | || | ||| | | ||| | || ||| | || | ||| Sbjct 2603448 AAATATCTG-GTACAGA------AACCATCACAAGAACATGTGATCGAGTTTATCCGCGA 2603396 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 | || ||| |||| || || || || || |||| ||||| | || ||||||| Sbjct 2603395 AACAGTCCTGATCAAACAGGAATTCCTGACGAAAACCCTTCCGGTTGACCTGCTTGGCAT 2603336 Query 125708 GAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767 ||| || | || ||| |||| || || || ||||| ||| | || ||| |||||| Sbjct 2603335 GAATTGTGACCTTTTGTCGCAGTATATTGAATTCGTGGCTGATGGACTGCTGCTCGAGTT 2603276 Query 125768 GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACT 125827 | | | ||||||||||| | |||||||||||| ||| ||| ||| || || Sbjct 2603275 GGTCATCGATAAGATTTACAATACGAAGAATCCCTTTAGTTTTATGGAGTTCATTTCGCT 2603216 Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || ||||| || ||||| || |||||||| || | ||||| Sbjct 2603215 TGAAGGTAAAACTAACTTCTTTGAGAAGAAAGTAGGAGAGTA 2603174 >seq4280 Length=912600 Score = 140 bits (154), Expect = 5e-28 Identities = 343/516 (66%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 96834 CCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCGGCAATAAACG 96892 || ||| | || |||||||| || || || | |||||| ||||| || || || || Sbjct 356319 CCCATGTTGAGGGTGTACAATAACACTGCCAAG-TACGTTGATCAGGGAGGTAACAAGCG 356377 Query 96893 GCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGA 96952 |||||| || | ||| | || | ||||| ||||| | || ||||| || || | || Sbjct 356378 GCCAGGTGCCTTTGCCATTTATCTCGAACCGTGGCATGGCGATGTTTTCGAGTTCCTGGA 356437 Query 96953 GATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTG 97012 | || ||| | ||| |||||| | |||||||||||| |||| || || || || Sbjct 356438 TTTAAAGAAGAACACCGGCGCTGAAGATGTCCGAGCCAGGGACATGTTCTACGCGCTTTG 356497 Query 97013 GGTGCCAGATTTGTTCATGAAGCGCGTCAACG---ACGGTGGCTACTGGAGCCTAATGTG 97069 | | || ||||||||||||||||| || | | ||| | ||||| || | ||||| Sbjct 356498 GATTCCGGATTTGTTCATGAAGCGAGTGGAGGCTAACGAAG---ACTGGTGCTTGATGTG 356554 Query 97070 CCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACAC 97129 ||| | | || || || ||||| ||||| || |||||||| |||||| Sbjct 356555 CCCTCATGAATGTCCTGGGCTATCCGACACATGGGGTGAGGAGTTTGAAAAACTGTACAC 356614 Query 97130 GGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGC 97189 | ||||| || || |||||| | | ||| | || | ||| ||||| || Sbjct 356615 ATCATACGAAGCGGAAGGACGATACATTCGGAAAGTGAAAGCCCAAGATTTGTGGTTTGC 356674 Query 97190 CATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAA 97249 ||| | | | || || || || || ||||||||| || || |||||| | || Sbjct 356675 AATCATCGAGTCCCAAGTGGAAACCGGTGTTCCGTACATGCTGTATAAGGATGCTTGCAA 356734 Query 97250 TCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAAT 97309 | || || || || | || | || ||||||||| |||| || || ||||| ||||| Sbjct 356735 CAGGAAAAGTAATCAGCAGAACATCGGAACCATCAAGTGCTCAAACCTTTGCACCGAAAT 356794 Query 97310 TGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 ||| || ||| |||| ||| || | || ||||| Sbjct 356795 TGTTGAATACTCCTCCAAGGATGAAATTGCTGTTTG 356830 Score = 102 bits (112), Expect = 1e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTG-ATCGATATGGCTGCCGACAGAG 98097 ||||| || || ||||| || |||| | |||| | || ||| | ||||| ||||| | | Sbjct 359428 TACAAAACCGTGTGGGAAATCTCCGTC-AAGA-GTTGCATCAAGATGGCAGCCGATCGTG 359485 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 ||| | ||| || ||| ||||||||||| | |||| || ||||||| |||| | Sbjct 359486 GTGCTTTCATCGATCAGTCGCAATCGTTCAACATTCACGTGGCTGAGCCCAACTACGGCA 359545 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 | || ||||| ||||| |||| ||||| | ||| || ||||| || ||||| || | Sbjct 359546 AACTTACCTCGATTCACTTCTACGGGTGGAAAATGGGACTGAAGACCGGAATGTATTACC 359605 Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGACGTGAATCG 98269 || ||||||| | || |||||| || | || || |||||| || ||| Sbjct 359606 TGCGAACAAAACCCGCGGTCAATGCTATCCAGTTCACTGTGGACAAGACTCG 359657 >seq4284 Length=891408 Score = 132 bits (146), Expect = 7e-26 Identities = 235/340 (69%), Gaps = 11/340 (3%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||||||||| || || || |||||| || ||||| || ||||||||||| Sbjct 85223 GTAGCCTTCGCCGCCGTGGAAGGTATTTTCTTTAGTGGAAGTTTCGCATCCATCTTTTGG 85282 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 | |||||||| ||||| ||||| || || || | ||||| || || || || ||| Sbjct 85283 TTGAAGAAGCGTGGACTGATGCCTGGGCTAACATTCTCCAACGAATTGATCTCACGTGAC 85342 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 || ||||| ||| |||||||| ||| |||| ||| |||||| || | || Sbjct 85343 GAAGGCCTGCACACGGACTTTGCTTGTCTTATGTT---CAAATATCTG-GTACAGA---- 85394 Query 125610 AGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 | ||| | | ||| || ||| | ||| | ||| || || ||| ||||| || Sbjct 85395 --AACCATCACAAGAACGTGTGATCGAGATTATCCGCGAAGCAGTCCTGATCGAACAGGA 85452 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 ||| || || || |||| ||||| | || |||||||||| || | || |||| | Sbjct 85453 GTTCCTGACGAAAGCCCTTCCGGTTGACCTGCTTGGCATGAATTGTGACCTTATGTCGCA 85512 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||| || || || ||||| ||| | || ||| ||||||| Sbjct 85513 GTATATTGAATTCGTGGCTGATAGACTGCTGCTCGAGTTG 85552 >seq73 Length=471406 Score = 93.3 bits (102), Expect = 6e-14 Identities = 231/348 (66%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||| || || || ||||||||||| ||| | || | ||| |||| ||| | Sbjct 408265 GGTGATCTAGGCCCGGTATACGGATTCCAATGGCGTCATTTTGGCGCCAAATATAAAACA 408206 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTCT 70185 ||| | ||||| | || |||||| | || || || ||||| | | || | | Sbjct 408205 TGCAATGATGACTACACAGGGCAGGGTATCGACCAGTTAGCAGA-AGTGATAAATCGCAT 408147 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 |||||||||||||| ||| | | || | ||| | ||||||| || |||| | | Sbjct 408146 TAAGACCAATCCAACGGATCGACGTATTATCATGAGTGCATGGAACCCGATAGATATCCC 408087 Query 70246 CCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATT 70305 |||||||| || || || || || || ||||| || |||| | | |||| || | Sbjct 408086 ACAAATGGCCCTTCCTCCTTGCCATTGCTTGGCGCAATTTTTCGTGGCAAATGGAGAACT 408027 Query 70306 GTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGC 70365 || || | ||||| | || || ||||||||||| || || || || || || Sbjct 408026 TTCGTGTCAGTTATATCAACGATCAGCTGATATGGGCCTCGGAGTCCCATTCAATATCGC 407967 Query 70366 AAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 || ||| || | |||| || ||||| || ||| |||| || || || Sbjct 407966 TAGTTATGCTTTACTGACTCATATGATGGCCCACGTTACAGGACTTAA 407919 >seq189 Length=4040890 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 49796 ACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAG 49855 ||||||||||| | ||||| || ||||||||||| |||||| ||| |||| |||||| Sbjct 3345423 ACCGTGGAGCCGTCGATGTTCCTGTACATGATGGCGTTCATGCTGACGTCGGTGATCGAG 3345482 Query 49856 CAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTC 49902 |||| ||| | | ||||| | || ||||| || || || || || || Sbjct 3345483 CAGGTGTTCTTCCTGTACAAGGCATGCACGGTGAATCACGGATATTC 3345529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741015134767320