Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4287 82.4 6e-11 >seq4287 Length=5058281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 174/256 (68%), Gaps = 13/256 (5%) Strand=Plus/Minus Query 21022 TCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGCGGACCAAACAAG 21081 ||||| |||| | || || |||| | || |||| ||||| ||||| || ||||| Sbjct 1363823 TCATCAGGATCGGCATGAACGACCACAGTGCGTCCCAGGATGCTCAGCGGTCCGGACAAG 1363764 Query 21082 CTCATCACGTTGTCGCTCATGTCGACA--GGCGTCAGCGCGGTGCAGCCCGCGGAGCGGA 21139 ||| | ||||| || ||||| |||| | ||| | || ||| | | Sbjct 1363763 GAAATCTGGCTGTCGGAGATATCGACCTTGGCGACTCCGCTG-----CCATCGGCGACAA 1363709 Query 21140 CGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTG--GT 21196 ||||||||| || ||| |||| | || ||||| ||||| | ||||| | ||| || Sbjct 1363708 CGTTGCCCAAGTCTCCGGCGTGTCTTTCGGCGGCATCGGGGCCACCGTGCTCCTTGCCGT 1363649 Query 21197 GCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 ||| |||| |||||| || || || ||||| |||||| || |||| |||||||||| Sbjct 1363648 GCG---GGTTGAAGTGCGGTCCAGCCGAGGTGCATCCGTTGGTGTTGTCACCGAACTCGT 1363592 Query 21257 GAACGTGAAAGCCGTG 21272 | | ||| || || || Sbjct 1363591 GGATGTGGAATCCATG 1363576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414548764753258