Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq810 104 9e-18 >seq810 Length=78467 Score = 104 bits (114), Expect = 9e-18 Identities = 716/1130 (63%), Gaps = 44/1130 (4%) Strand=Plus/Plus Query 56373 TTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAG 56432 ||||| |||| |||||| || || |||||||| || || | ||| | |||||| Sbjct 43949 TTGTTGAACCATGACACCCATTCCAGGGTTGCCAGTTCGACGGCTTCCCGGGTCTTCCAG 44008 Query 56433 CTCTTACGG---TGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCG 56489 | ||| || || | ||| || ||||| || || ||||| |||| |||| ||| Sbjct 44009 GGCGCCCGGCGATGGATCAACTCGGCCTTGTACAGCCCGTTGATCGTCTCGGCCAGGGCG 44068 Query 56490 TTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGC 56549 |||||||| |||||||| | || ||| || | | ||||| || || ||| Sbjct 44069 TTGTCATAGGAGTCGCCCTTGCTGCCTACCGAAGGTTCGATGCCGGCCTCGGCCAGCCGC 44128 Query 56550 TCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGAT--------GGATGG 56601 || || ||| | || || || || || | ||| |||| ||| | Sbjct 44129 TCGGTGTAGCGGATGCTGACGTATTGCGATCCCCTGTCGGAGTGACACACGAGCGGACCG 44188 Query 56602 TGC-CAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 56660 ||| || || | || || |||| ||||||||||| ||||| |||||||| ||| Sbjct 44189 TGCGCACCAGGCTGCCGAGCGTACAAGGCCTGCTCCAGAGCATCGAGCACGAA-GTCCAC 44247 Query 56661 TC-CATAGACGATG-AGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAA 56718 | ||| | | || |||||||| ||||||||| | | ||||| || || | | Sbjct 44248 CCGCAT-GCTGGTGCTCACCCGCCAGCCCACGATGCGCCGCGAGAACACGTCGATCACGA 44306 Query 56719 ACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCT 56778 | ||||| || | |||||||||| || |||||| || || || |||||||| || Sbjct 44307 AGGCCACGTACAGCCAGCCCTGCCAGGTCGAGACGTATGTGAAGTCGCTCACCCACAACT 44366 Query 56779 GGTCAGGTCGTTCTGC-CAC-GAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 56836 ||| || || |||| ||| |||||| ||||| || ||| ||||||| | ||| Sbjct 44367 GGTTCGGGCG--CTGCGCACTGAACTGCCGGTTGACCAGGT--CCTGCGGGCATGGCGCC 44422 Query 56837 C-CG----GCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACC-GGCAAGTCCCAT 56890 | || || ||| || || || | | || || || | ||| || |||| ||||| Sbjct 44423 CGCGCATCGCCGATCGTTGTGCGCATCACCTTGCCGCGCACAACGCCACGCAA-CCCCAT 44481 Query 56891 AACCGC-CATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACT 56949 | || ||| || || |||| || || | ||||| | | ||||| ||| || | Sbjct 44482 -GCGGCGCATCAGGCGCTCCACGGTGCAGCGCGCCACGCGCACGCCTTCACGTTGCAGTT 44540 Query 56950 GACGCCAGACTTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCT 57009 | |||||||| || | ||||| ||| | | || | | | || | || || | Sbjct 44541 GTCGCCAGACCTTGTCGGCCCCGTAGACCCGCAGGTTGGCCTGCCACACCCTCTCGATGT 44600 Query 57010 CTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTC 57066 | |||| | ||| |||| || ||| | ||| | | | || | || | Sbjct 44601 GGGGCATCAGTTCCTGGTCTCGCTGGGCTCGGCCGCTGAGCAAGGCAGCATCGCGCTGCC 44660 Query 57067 -GCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGT 57125 |||| | || | || |||| ||| ||||| || ||||| ||||| | ||| Sbjct 44661 GGCTGGCG-TGCCGCCGG---TACGCTGATGGGGCGATCTGCAGCAGCCTGCAGATCGGC 44716 Query 57126 CCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGCAT-CATTTTTTCCAGAGGCGG 57184 ||||||| | ||||| || || |||| || ||| | ||| ||| ||||| Sbjct 44717 TCGACCCCATGCTGCTGGCGGTGCCGGTCCA-CAAAGGCGTACATCACTTCAGCCGGCGG 44775 Query 57185 TCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGC 57244 |||| |||||||| || ||| | ||| ||| | ||||| ||||| ||||| Sbjct 44776 TCGAGCTCCGCCTGGGCGAAAAACGCGCTGGCCAGCTTGAGGATCTCGTTGGCACGGCGA 44835 Query 57245 AGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCA 57304 || || || ||| || ||||| || || | |||| || || |||| | | Sbjct 44836 AGCTCGCGCACTTCGCGCTCCAGTTCCTTGACGCGCTTGGCCTCGGCCGTGGT---CACG 44892 Query 57305 CCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGC 57364 || || | || || || ||||| ||||| || |||||| |||| |||| ||| Sbjct 44893 CCTTCGCGCTGGCCCGTGTCACGCTCGTGCTGACGCACCCAGTTCAGCAGCGTCTGTGGC 44952 Query 57365 GTACAGCCAATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCC 57424 || | ||| ||||| ||| || || | ||||||||||| || || || || | Sbjct 44953 GTGCTGCCGATCTTGCCGGCGATCGACACGACCGCCGCCCACTGCGATTCGTACTCTGCT 45012 Query 57425 TGACTTTCCAGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAA 57474 | || | ||||| || | ||| |||| ||| || | || ||||| Sbjct 45013 CGGTGCTCGAACACCATGCGCACCGCACGCTCACGAACCTGCGGCGAAAA 45062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200522773830159