Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq3013 178 1e-39 >seq3013 Length=6250 Score = 178 bits (196), Expect = 1e-39 Identities = 307/438 (70%), Gaps = 20/438 (5%) Strand=Plus/Minus Query 99357 CGACAGCGGCGAGGGGTGGCTGTGCGTCAGCACGAGGTGCCGCTTCCCGGCCGCCCCAAA 99416 ||||||||||||||||||| | ||| ||||| |||||||||| | || | || Sbjct 6085 CGACAGCGGCGAGGGGTGGTTCGACGTGAGCACCAGGTGCCGCTGCGCGTC--GATCAGC 6028 Query 99417 GGCC-----CGCTGGGCGTGCGCGCCCCAGAGCATGAACACCATCGGGCCGC-CCTGCGC 99470 |||| ||| ||||||| |||||| |||||||||||| |||||||| || ||| Sbjct 6027 GGCCGCTTGGACTGCGCGTGCGAGCCCCACAGCATGAACACC-GCGGGCCGCGCCGCCGC 5969 Query 99471 GCTCAGGCGGGCCAGCACCGCGTGCACCAGCCGCCCCCAGCCCAGGCTGGCGTGCGAGCC 99530 || || | |||| | |||||||| |||| | |||||||| || |||||| | | Sbjct 5968 GCCCACGTGGGCGATCACCGCGTCGGTCAGCGCCTCCCAGCCCTTGCCGGCGTGGCTGGC 5909 Query 99531 CGGC-GCCCCGCTCCGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCC 99589 ||| | || || | ||||||||||| |||||| ||||||||||||||| ||| |||| Sbjct 5908 GGGCTGGGCCTCTTC-CACGGTGAGCGTGGTGTTCAGCAGCAGCACGCCGTTGCGGGCCC 5850 Query 99590 AGGCCTCCAGGCAGCCG---TGCTGCGGCC--GCGGG----GTCCCGGGGAAGTTCTTCT 99640 | |||||| |||| ||| ||||| ||||| | | || | || || Sbjct 5849 ACTTGACCAGGCTGCCGCCCGGCTCCGGCCAGGCGGGAAACGCCACGCCAAGGTCGCGCT 5790 Query 99641 GCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGA 99700 ||| || | ||||||| | || ||||| | | | |||||| | ||| | Sbjct 5789 GCAGCTCCTTGAAGATGTTGCGCAGCGACGGCGGCAGCTGCACGCCGGGCGCGACGGAAA 5730 Query 99701 AGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCT 99760 | ||||| || | |||||| ||| ||| |||||| |||||||| ||||||||||| || Sbjct 5729 ACGCCAGCCCCTCGGCCTGGCCGCGGCCGTGGTACGGGTCCTGCCCCAGGATGACCACGC 5670 Query 99761 TGACGTCCTCGGGCGCCG 99778 ||| |||||||| || Sbjct 5669 GCACGCTCTCGGGCGGCG 5652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440872983031320