Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq265 320 6e-83 seq476 297 7e-76 seq1398 134 5e-27 >seq265 Length=448903 Score = 320 bits (354), Expect = 6e-83 Identities = 411/559 (74%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 22188 CCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTT 22247 |||||| |||||||||| || ||||| ||||| || || | || ||| | ||| || Sbjct 64454 CCCATTGTTCCCTGGATTGGGGGCAAACGTCGCCTGGCAAAACATATCCTGCCGTTATTC 64513 Query 22248 CCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGC-G 22306 ||||||||| ||||| |||||| |||| |||| ||||||||||||||| || | Sbjct 64514 CCGAAGCACACATGTTATGTCGAGCCGTTCTGCGGCGCGGCGGCGCTGTACTTTTTGAAG 64573 Query 22307 ACCGCCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCG 22366 | ||||| || ||||||||||||||| || ||||| ||| | |||||||||||||| Sbjct 64574 GCTCCCAGCAAGAC-CGAGGTGATCAACGACATTAACGGTGAGTTAGTGAACCTGTATCG 64632 Query 22367 CGTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCG 22426 ||| || |||| || || |||||||| ||||| |||||||| ||||||||| ||||| Sbjct 64633 CGTGGTCAAGCATCACCTGGAAGAGTTTGTGCGGCAGTTCAAGTGGGCGCTGGTCAGCCG 64692 Query 22427 GCAGGTGTTCGAGTGGCTGAAGCATACGGTCCCG---GAAACCCTCACCGACATCCAGCG 22483 ||| | | |||||||| || || |||| |||||||| ||||| |||||||| Sbjct 64693 CCAGATTTATAAGTGGCTGCAGGCCAC---CCCGGAAGAAACCCTGACCGATATCCAGCG 64749 Query 22484 TGCGGCACGCTTCTACTACCTGCAAAA--AAGTTGCTTTGGCGGGAAGCTTGAAGGGCAG 22541 ||| || || ||||| |||||||| || ||| ||| ||||| ||| | | | |||| Sbjct 64750 TGCAGCCCGGTTCTATTACCTGCAGAAGCAAG--CCTTCGGCGGCAAGGTGGCTGAGCAG 64807 Query 22542 ACGTTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAG 22601 ||||| || |||| || | | ||| | | |||||||||||||| ||||| ||| Sbjct 64808 ACGTTTGGGGTATCGACCACCAGTGCGCCCCGTTTCAACCTGCTGCGCATTGAAGAGGAG 64867 Query 22602 CTATCGGCGGCGCACATTCG--TCTCGCGAATGCGTACATCGAGCGGCTCGATTGGGCGA 22659 | ||| ||||||| | || | || || | || ||||||| | || ||||| | Sbjct 64868 TTGTCGATGGCGCACCTGCGGTTATCACGCA--CGCTGATCGAGCATATGGACTGGGCCA 64925 Query 22660 CCTGCATCGATCGTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCG 22719 |||||||| || || |||||||| ||||| ||||||||| || |||||||| | | Sbjct 64926 CCTGCATCCGGCGCTATGATCGGCCCCACACCCTGTTCTACTGCGACCCGCCGTATTGGG 64985 Query 22720 AGACTGAAGGGTACGGCGT 22738 || ||||| || ||||| Sbjct 64986 GCACGGAAGGTTATGGCGT 65004 >seq476 Length=182463 Score = 297 bits (328), Expect = 7e-76 Identities = 482/687 (70%), Gaps = 14/687 (2%) Strand=Plus/Plus Query 22188 CCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTT 22247 || || || || ||||||||||||||||| || || || | ||| | | |||| |||| Sbjct 143861 CCGATCATCCCGTGGATCGGCGGCAAGCGCCGGCTGGCGAAGCACCTGCTGCCGCTCTTT 143920 Query 22248 CCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGCGA 22307 || ||||| | || ||||||||| |||| || | ||| ||||||| ||||||| | Sbjct 143921 CCCGAGCACCAGTGCTACGTCGAGCCGTTCTGCGGAGCGGCCGCGCTGTTCTTCATGAAA 143980 Query 22308 CCGCCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGC 22367 || |||| | || ||| ||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 143981 CCTCCAGTGAAGGCCGAAGTGATCAACGACATCAACGGCGAGCTGGTGAATCTGTACCGC 144040 Query 22368 GTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGG 22427 || || ||||| | |||||||| ||||||| |||| ||| | |||| || Sbjct 144041 GTGGTGGCCAACCATTTGACTGAGTTCGTTAAGCAGTTCAGATGGTCGCCGGTGAGCAGG 144100 Query 22428 CAGGTGTTCGAGT-GGCTGAAGCATACG--GTCCCGGAAACCCTCACCGACATCCAGCGT 22484 || | || ||| ||| | ||| || || ||| ||| || || || ||||| Sbjct 144101 CAAATCTTTAAGTGGGCCGTAGCCGCCGAAGTAGCGG---GCCTTACGGATATTCAGCGC 144157 Query 22485 GCGGCACGCTTCTACTACCTGCAAAAAAGTTGCTTTGGCGGGAAGCTTGAAGGGCAGACG 22544 || || || ||||||||||||||| | |||||||||| | |||||||| Sbjct 144158 GCTGCGCGGTTCTACTACCTGCAACGGCTTGGCTTTGGCGGCGTCGTCGAAGGGCACCGC 144217 Query 22545 TTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAGCTA 22604 ||||| || | || || |||| | | | |||| ||| ||||||| || || || || Sbjct 144218 TTCGGCACCTCAACAACAACGGGGGTGCGGCTGAGTCTGATGCGCATTGAGGAGGATCTG 144277 Query 22605 TCGGCGGCGCACATTCGTCTCGCGAATGCGTACATCGAGCGGCTCGATTGG-GCGACCTG 22663 |||||||| || |||| | ||| ||| || |||| ||||| ||| ||| || Sbjct 144278 TCGGCGGCACATCTTCGCTTGGCGCGGGCGACGATTGAGCACCTCGACTGGCACGA-GTG 144336 Query 22664 CATCGATCGTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCGAGAC 22723 |||| || ||||| ||||| ||||||||||||||| |||||||| |||| | || Sbjct 144337 CATCACCCGCTACGACCGGCCCCACACGCTGTTCTACTGCGATCCGCCTTACTGGGGCAC 144396 Query 22724 TGAAGGGTACGGCGTCGCATTCCCTTTCACGGAGTACGAGAAGATGGCCGAGCGGCTGCG 22783 |||||||||||||| | ||| | |||||||| ||||||||||| | || Sbjct 144397 CGAAGGGTACGGCGTGGAGTTCGGACTGGGTGAGTACGACCGGATGGCCGAGCTGGCCCG 144456 Query 22784 GTCGATCAAGGGGCGCGCGATCGTCAGC---CTCAACGACCATCCGGAGATCCGGCGCGT 22840 | |||||||||| || ||| || | | | || ||| ||| ||||| || |||| Sbjct 144457 GACGATCAAGGGCCG---GATGGTGATCTCGGTGAATGACATTCCCGAGATGCGTCGCGC 144513 Query 22841 GTTCGCCGGTTTCCATATCGAGAGCGT 22867 |||| ||| | | || ||| |||| Sbjct 144514 CTTCGACGGCCTGCGGATGGAGCGCGT 144540 >seq1398 Length=15916 Score = 134 bits (148), Expect = 5e-27 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 2987 CGGCGCCATGCAGGCCGGGAAAACGATGGTGCTGGAAGCCGGGATGAAGTACCAGGCCAT 3046 ||| || || | ||||| ||| | || ||||||||| || ||| | | |||| Sbjct 14910 CGGAGCGCTGAATGCCGGCAAACCTGTGCTGCTGGAAGGTGGCATGGACGTTGTGACCAT 14851 Query 3047 CACGATGAATCCCGGTGATGTCCAGTTGCTGGAGACGCGGGCATTCAACATCGAGGAAAT 3106 | || || || | || | ||| |||| || |||| || |||| |||||||||||| Sbjct 14850 CGGCATCAAGCCTAGCGACGCTCAGCTGCTCGAATCGCGCGCTTTCAGCATCGAGGAAAT 14791 Query 3107 CTGCCGCTGGTATCGCGTTCCGCCGTTTATGGTCGGCCACAGCGAGAAATCGACAAGCTG 3166 ||||||||||| | | || |||||| ||||||||||| |||||| || || ||||| Sbjct 14790 CTGCCGCTGGTTTGGTGTGCCGCCGCACATGGTCGGCCATTCCGAGAAGTCTACGAGCTG 14731 Query 3167 GGGAACTGGGATCGAACAACAGACGCTCGGCTTTTTGACATTCACCCTGCGGCC 3220 ||| || || ||||| || |||| | | ||||| |||| ||||| |||||||| Sbjct 14730 GGGCACCGGCATCGAGCAGCAGATGATTGGCTTCCTGACCTTCACGCTGCGGCC 14677 Score = 91.5 bits (100), Expect = 5e-14 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 14366 CTCGAGCCGGGTCGACTGATCGAGCTTTTCGAGGTCGACTGCACGGAAATCGGCGCCGAC 14425 || ||||| ||| | | ||||||| |||||| | ||| || | ||||||| ||| Sbjct 4638 CTAGAGCCTGGTGCCCAGGTCGAGCTATTCGAGCTAGACGCGACAGGCATCGGCGGCGAT 4579 Query 14426 ATGCTGCGCTTCCATGGACACATGCAGTCGACGTC-GATCGTGTGGCAAGGGAACGAGTA 14484 || | ||||| || |||| | ||||| |||| ||||||| || ||| || Sbjct 4578 GTGGAGTTGTTCCACGGCTACATTCC--CGACGAGTGATCTTGTGGCAGGGCCGCGAATA 4521 Query 14485 CAAGCCGTGGCCGATACAGGCCGCGGGCTTCGAGCAGACATCCG-ACGCGCAGC-AGCCA 14542 | |||| ||||| || || ||| ||| |||| | | || | || ||||| |||| Sbjct 4520 CCAGCCTTGGCCCATCGAGTCCGAGGGTTTCGCTCG--CGTCGGGACTGGCAGCCAGCCC 4463 Query 14543 TCGCCGACGCTGCGGGTGGGCGACATCAACGGAACGATTTCGGCGCTGTGCGTTGCGCTT 14602 | || || || || |||||| || | || ||||| |||||||||||| ||||||| Sbjct 4462 ACACCAACTCTTCGAGTGGGCAACGTATCGGGTACGATCTCGGCGCTGTGCATTGCGCTC 4403 Query 14603 GGCGATCTCGTCGGCGC 14619 | ||| ||||| ||||| Sbjct 4402 GACGACCTCGTGGGCGC 4386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175436489142518