Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq986 158 3e-33 seq251 132 1e-25 seq130 118 2e-21 seq4284 116 9e-21 seq98 107 4e-18 >seq986 Length=4314454 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| ||||| || || |||||||| ||||| | ||||| Sbjct 1408471 AGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCC 1408412 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| ||||| || || || | |||||||| ||||| || ||||| || ||| Sbjct 1408411 TCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATACCTTCCTTGTCC 1408352 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| ||||| || || || | ||| || ||| || ||||| | || || ||| Sbjct 1408351 TGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACCTCCAAAGTGATGGTC 1408292 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||| || || ||||| |||||||| Sbjct 1408291 TTACCAGTAAGAGTCTTCACAAAAATCTGCAT 1408260 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| ||||| || || |||||||| ||||| | ||||| Sbjct 1408927 AGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCC 1408868 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| ||||| || || || | |||||||| ||||| || ||||| || ||| Sbjct 1408867 TCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATACCTTCCTTGTCC 1408808 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| ||||| || || || | ||| || ||| || ||||| | || || ||| Sbjct 1408807 TGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACCTCCAAAGTGATGGTC 1408748 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||| || || ||||| |||||||| Sbjct 1408747 TTACCAGTAAGAGTCTTCACAAAAATCTGCAT 1408716 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||||||||| || || ||||| || ||||| | ||||| Sbjct 1408243 AGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAGAGTACGGCCGTCC 1408184 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | |||||||| ||||| || ||||| || ||| Sbjct 1408183 TCGAGCTGCTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGGATACCTTCCTTGTCC 1408124 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || || || || ||||| | ||| ||| ||| || ||||| || || || ||| Sbjct 1408123 TGGATTTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTC 1408064 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| |||||||| Sbjct 1408063 TTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 1408032 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||||||||| || || ||||| || ||||| | ||| || Sbjct 1408699 AGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAGAGTACGACCATCC 1408640 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| ||||| || || || ||||| || ||| Sbjct 1408639 TCGAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATGCCTTCCTTGTCC 1408580 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| || ||| || ||||| || || || ||| Sbjct 1408579 TGGATCTTGGCCTTAACGTTCTCGATGGTGTCCGAAGGCTCGACCTCCAGAGTGATGGTC 1408520 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || || |||||||| Sbjct 1408519 TTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1408488 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||||||||||| || || || || || | ||| | ||| || Sbjct 1408016 AAGGACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCGGACAAAGTACGACCATC 1407957 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| ||||| || || || ||||| || || Sbjct 1407956 CTCGAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATGCCTTCCTTGTC 1407897 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | ||| || ||| || ||||| || || || || Sbjct 1407896 CTGAATCTTGGCCTTAACGTTCTCGATGGTGTCCGAAGGCTCGACCTCCAGAGTGATGGT 1407837 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || || || |||||||| Sbjct 1407836 CTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1407804 >seq251 Length=2698768 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| ||||| || ||||| | ||| ||||| || || || || || || Sbjct 664049 TCCTTCTGGATATTGTAGTCGGAAAGAGTACGACCATCTTCCAGCTGCTTACCGGCGAAG 663990 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||| ||||| || || |||||||| |||||||| ||||| || |||||||| Sbjct 663989 ATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTC 663930 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || ||| || || || || ||||| || ||||||||||| || || || || Sbjct 663929 TCGATAGTGTCGGATGGCTCGACTTCAAGTGTGATGGTCTTACCAGTCAGAGTCTTGACG 663870 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 663869 AAGATCTGCAT 663859 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| | | || || | ||| | ||| |||||||||||| || ||||| || Sbjct 664770 TCCGCCTCTCAATCGCAGGACCAAATGCAGTGTGCTTTCTTTCTGAATGTTGTAGTCGGA 664711 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||| || || || || || || || | | ||| ||||| ||||| Sbjct 664710 AAGGGTACGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAATCGCTGCTGATCTGGAGG 664651 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| ||||| || ||||| || |||||||| || | || ||| || || || Sbjct 664650 GATTCCTTCCTTATCTTGGATCTTAGCCTTTACATTCTCGATAGTGTCGGATGGCTCAAC 664591 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||| || || || || || || |||||||| Sbjct 664590 TTCCAGGGTGATGGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 664543 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||| ||||| || |||||||| Sbjct 663404 ATTCCACCACGGAGACGCAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTATAGTCC 663345 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || || || || || | | ||| ||||| || Sbjct 663344 GACAGGGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGC 663285 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || ||||| | ||| || || || Sbjct 663284 GGGATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATGGTGTCAGATGGCTCG 663225 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||||||||| || || || || || |||||||| Sbjct 663224 ACTTCAAGGGTGATGGTCTTACCAGTCAGAGTCTTGACGAAGATCTGCAT 663175 >seq130 Length=3389925 Score = 118 bits (130), Expect = 2e-21 Identities = 202/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652 ||||| || || || || || ||||| | ||| |||||||| | || || |||||| Sbjct 1199345 TGGAACTCTGCACAAATTCAGATGGTCAAGGAAGGTAAAATGCACGGCTTTTTGCGAATG 1199404 Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAG- 238711 |||||||| || ||||| | || ||||| | | |||| ||||||||||| || | | Sbjct 1199405 TATTGGGCAAAGAAGATTTTGGAGTGGACCAAAACTCCGGAGGAAGCTCTT-GAAACGGC 1199463 Query 238712 TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTG 238771 ||||| ||||||||| ||| | | ||||| || || || || ||||| || || Sbjct 1199464 AATTTACCTGAACGATCGCTACCAGTTGGACGGCCGTGACCCGAATGGTTACGTTGGCTG 1199523 Query 238772 TATGTGGTCAATATGTGG--ATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGA 238829 |||||||| || || || ||| ||||| || |||| |||| | | |||||| Sbjct 1199524 CATGTGGTCCAT-TGCGGGCATT-CACGACCAGGGATGGCGTGAGCGGGAAGTGTTTGGA 1199581 Query 238830 AAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGT 238876 ||| || | |||||||| || ||||| |||| ||| || || || Sbjct 1199582 AAAATTCGCTACATGAACTACGAAGGCTGTAAGCGAAAGTTCGACGT 1199628 >seq4284 Length=891408 Score = 116 bits (128), Expect = 9e-21 Identities = 195/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 269068 CTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTA 269124 |||||||| || ||| |||| ||||| |||| ||||| || | | | || | Sbjct 85150 CTGTGTGAAGAAGAAAGCTGACTGGGCATTGAACTGGATTTCAAGCAAAAAGGCCAACTT 85209 Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGC 269184 ||||||| | | || || || ||||| || |||||||| |||||| || ||| || Sbjct 85210 CGGAGAACGCGTCGTAGCCTTCGCCGCCGTGGAAGGTATTTTCTTTAGTGGAAGTTTCGC 85269 Query 269185 CGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATT 269244 | ||||||||||||||||| | || || ||||| || |||| ||||| |||||||| Sbjct 85270 ATCCATCTTTTGGTTGAAGAAGCGTGGACTGATGCCTGGGCTAACATTCTCCAACGAATT 85329 Query 269245 GATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCT 269304 ||| | |||||||| | ||| ||||| ||||| | |||| | | || ||||| Sbjct 85330 GATCTCACGTGACGAAGGCCTGCACACGGACTTTGCTTG--TCTTATGTTC-AAATATCT 85386 Query 269305 TTCACACAAACCTTCTCAAGATAGAGTATACGAAATTAT 269343 ||| ||||| || ||||| | || ||| ||||| Sbjct 85387 GGTACAGAAACCATCACAAGAACGTGTGATCGAGATTAT 85425 >seq98 Length=5729030 Score = 107 bits (118), Expect = 4e-18 Identities = 568/893 (64%), Gaps = 22/893 (2%) Strand=Plus/Minus Query 268709 ATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTT 268768 || || || || ||| || || || ||| |||||| || |||| | || ||| | Sbjct 2604036 ATTTTCCCCATCCAGTATCATGGCATTTGGCAGATGTAGAAGTAGGCAGAGGCATCTCTC 2603977 Query 268769 TGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCA 268828 ||||| |||| ||||| ||||| ||| | || || |||||| |||| | || || Sbjct 2603976 TGGACAATAGAGGAAGTCGATCTCTCTAAAGATCTAGCCGATTGGGAAAAGCTCAAGTCA 2603917 Query 268829 GAAGA-AAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGT 268887 | || ||| | || || || || | | || || |||| | | ||||| | | | Sbjct 2603916 GGCGAGAAGCAC-TTCATCTCACATGTATTGGCCTTCTTTGTCGCTTCCGATGGCAGCAT 2603858 Query 268888 TAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTT 268947 ||||| || || || || ||| | || ||| | ||| | | || || | || || Sbjct 2603857 GAACGAGAACCTCGTGGAACGTTTCAGCCAGGAGCTCCAGGTCACCGAGGCACGTTGCTT 2603798 Query 268948 TTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGA 269007 || ||||| || || || || ||||| | || || |||||| || | || || Sbjct 2603797 CTATGGATTTCAAATGGCAATGGAAAACGTCCACAGTGAAATGTACTCGCTGCTTATCGA 2603738 Query 269008 TACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTAT-GAGAACTAT 269064 ||||||||| |||| ||| ||| | | ||| | ||| | | || || || | | Sbjct 2603737 TACTTATATTCGTGATTCCAAACAAAGGGAGT-ACT-TGTTCAATGCCATCGATAA-TCT 2603681 Query 269065 GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT---AAACGATAGCGCGCC 269121 | |||||||| || ||| |||||| | | |||| |||| || | | | || Sbjct 2603680 GCCCTGTGTGAAGAAGAAAGCTGAATAGACATTGAACTGGAATTCAAGCAAAAAGGCCAA 2603621 Query 269122 TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTT 269181 | ||||||| | | || || || |||| ||| |||| || ||||| || ||| Sbjct 2603620 CTTCGGAGAACGCGTCGTAGCCTTCGCCGTTGTGGAAGAAATTTTCTTCAGTGGAAGTTT 2603561 Query 269182 TGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGA 269241 || | ||| |||||||||||| | || || | ||| || |||| ||||| |||| Sbjct 2603560 CGCATCCATCAATTGGTTGAAGAAGCGTGGACTGACGCCTGGGCTAACATTCTCCTACGA 2603501 Query 269242 ATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTA 269301 |||||| | |||||||| | ||| || || | | | | |||| | | || || Sbjct 2603500 ATTGATCTCACGTGACGAAGGCCTGCACATGGAATTTG--TTTCTCTTATGTTC-AAATA 2603444 Query 269302 TCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTAT---AGATTCAGCTGTTTC 269358 ||| ||| ||||| || ||||| || ||| |||| || ||| | | Sbjct 2603443 TCTGGTACAGAAACCATCACAAGAACATGTGATCGAGTTTATCCGCGAAACAG----TCC 2603388 Query 269359 TGTAGAAACA-GAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCA 269417 || ||||| ||||| || ||| || | || | | || || | || |||||| | Sbjct 2603387 TGATCAAACAGGAATTCCTGACGAAAACCCTTCCGGTTGACCTGCTTGGCATGAATTGTG 2603328 Query 269418 AATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTA 269477 | || | |||||| | ||||| ||||| || ||||| | || | | Sbjct 2603327 ACCTTTTGTCGCAGTATATTGAATTCGTGGCTGATGGACTGCTGCTCGAGTTGGTCATCG 2603268 Query 269478 GTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTA 269537 ||| | || || | ||||| ||||||||||||||| || || | ||||||| Sbjct 2603267 ATAAGATTTACAATACGAAGAATCCCTTTAGTTTTATGGAGTTCATTTCGCTTGAAGGTA 2603208 Query 269538 AGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATG 269590 | |||| ||||| |||||| ||| | | |||||||| |||||| ||| Sbjct 2603207 AAACTAACTTCTTTGAGAAGAAAGTAGGAGAGTATCAGAAGTGGGGTGTTATG 2603155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151328223346956