Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1821 172 5e-38 seq154 163 2e-35 >seq1821 Length=1685694 Score = 172 bits (190), Expect = 5e-38 Identities = 218/295 (74%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || ||||| ||||| ||||| ||| | |||||| || ||||| ||||| ||| Sbjct 770361 CCGGTGGATCCGAACCCGCCGCTGCCCCGTTCCGTTTCCGTCAGGCTGCTGACCTCCTCC 770420 Query 5564 ACATCGGGGAACGCAGCG-CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 | || || | | || ||||||||||| | |||||| || || || ||| || Sbjct 770421 AGTTCCGGATA-GAAGATTCGCTCGCAGATGAACTGCGCAATGCGATCCCCCCGGGCCAC 770479 Query 5623 CTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 || ||| ||||||| |||| |||||| || ||||| |||| |||||| |||||||| Sbjct 770480 CTTGAACTCGTTGT--CCGAGTGGTTGAATAGGACCACACCCAGGTTGCCCCGGTAGTCC 770537 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 |||| | || || |||||||| |||||||||| ||||| ||||| ||||| |||||| Sbjct 770538 TCGTCCACAACTCCGGCGCCCACATCGATGAAGTTTTTGACGGCCAGTCCGGATCGGGGA 770597 Query 5741 GCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCA 5795 || || |||||||||||||| || ||||| || | ||| | ||| || | ||||| Sbjct 770598 GCAACTCGGCCGTAGCACCCTTCCGGAAGTTGCACCTGGATGTCGGTCATCACCA 770652 >seq154 Length=645030 Score = 163 bits (180), Expect = 2e-35 Identities = 216/295 (73%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || ||||| ||||| ||||| ||| | |||||| || ||||| ||||| ||| Sbjct 217406 CCGGTGGATCCGAACCCGCCGCTGCCCCGTTCCGTTTCCGTCAGGCTGCTGACCTCCTCC 217347 Query 5564 ACATCGGGGAACGCAGCG-CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 | || || | | || ||||||||||| | |||||| || || || ||| || Sbjct 217346 AGCTCCGGATA-GAAGATTCGCTCGCAGATGAACTGCGCAATGCGATCCCCCCGGGCCAC 217288 Query 5623 CTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 || ||| ||||||| |||| |||||| || ||||| |||| ||| || |||||||| Sbjct 217287 CTTGAACTCGTTGT--CCGAGTGGTTGAATAGGACCACACCCAGGTTACCCCGGTAGTCC 217230 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 |||| | || || |||||||| |||||||||| ||| || ||||| ||||| |||||| Sbjct 217229 TCGTCCACAACTCCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGTCCGGATCGGGGA 217170 Query 5741 GCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCA 5795 || || ||||| |||||||| || ||||| || | ||| | ||| || | ||||| Sbjct 217169 GCAACCCGGCCATAGCACCCTTCCGGAAGTTGCACCTGGATGTCGGTCATCACCA 217115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430029467192984