Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq251 107 2e-18 seq4622 93.3 4e-14 seq986 84.2 2e-11 >seq251 Length=2698768 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||||| || ||||||||||| | || || | || |||||||| Sbjct 662238 ATGAAGGGTACTCTCCTTCTGGATGTTGTAATCCGACAGGGTACGACCATCTTCCAGCTG 662179 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || |||||||||||||| ||| | || |||||| ||| || || Sbjct 662178 CTTACCGGCGAAGATCAAACGCTGCTGATCTGGCGGGATACCTTCCTTATCCTGGATCTT 662119 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || ||||||| | ||| ||| | || ||||| || || || Sbjct 662118 GGCCTTGACATTTTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTTCCAGT 662059 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||| Sbjct 662058 CAGAGTCTTAACGAAGATCTGCAT 662035 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||||| || ||||||||||| | || || | ||||||||||| Sbjct 661782 ATGAAGGGTACTCTCCTTCTGGATGTTGTAATCCGACAGGGTACGGCCATCCTCCAGCTG 661723 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || ||||||||||||||| || | | ||||| ||| || || Sbjct 661722 CTTACCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATTCCCTCCTTATCCTGGATCTT 661663 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | || || || | | || ||| | || ||||| |||||||| Sbjct 661662 GGCCTTCACATTCTCGATCGTGTCCGAGGGTTCGACCTCCAAGGTGATGGTCTTACCGGT 661603 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGT 48729 || ||||| || ||||||||||| || Sbjct 661602 TAGGGTTTTGACGAAAATCTGCATTGT 661576 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | || || | ||| || ||||||||||| || |||||||| || | Sbjct 662034 ACCTCCGCGGAGACGCAAAACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 661975 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | || ||||||||||| ||| | | || |||||||||||||| || Sbjct 661974 -AAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGCG 661916 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||| ||| || || ||||| | | || ||||||| | ||| Sbjct 661915 GGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCAA 661856 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || | ||| |||||||| |||||||| Sbjct 661855 CCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 661807 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | || || | ||| || ||||||||||| || |||||||| || | Sbjct 662490 ACCTCCGCGGAGACGCAAAACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 662431 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | || ||||||||||| ||| | | || |||||||||||||| || Sbjct 662430 -AAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGCG 662372 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||| ||| || || ||||| | | || ||||||| | ||| Sbjct 662371 GGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCAA 662312 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || | ||| |||||||| |||||||| Sbjct 662311 CCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 662263 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| ||||||||||| || |||||||| || | || || || | || ||||||| Sbjct 664290 ATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA-AAGGGTACGGCCATCTTCCAGCT 664232 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||||||| || | || |||||||||||||| || | | |||||| ||| || | Sbjct 664231 GCTTACCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTATCCTGGATCT 664172 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | || ||||||| | ||| ||| | || ||||| ||||||| Sbjct 664171 TAGCCTTGACGTTTTCAATAGTATCGGATGGCTCAACCTCCAGGGTGATGGTCTTACCGG 664112 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || || || |||||||| Sbjct 664111 TCAGAGTCTTGACGAAGATCTGCAT 664087 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||||| ||||| || ||||| || || | || || | || |||||||| Sbjct 662694 ATGAAGAGTGCTTTCCTTCTGGATGTTATAGTCCGACAGGGTACGACCATCTTCCAGCTG 662635 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || |||||||||||||| ||| | || |||||| ||| || || Sbjct 662634 CTTACCGGCGAAGATCAAACGCTGCTGATCTGGCGGGATACCTTCCTTATCCTGGATCTT 662575 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || ||||||| | ||| ||| | || ||||| || || || Sbjct 662574 GGCCTTGACATTTTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTTCCAGT 662515 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||| Sbjct 662514 CAGAGTCTTAACGAAGATCTGCAT 662491 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| ||||||||||| || || ||||| || | || || || | || ||||||| Sbjct 664062 ATGAAGAGTGCTCTCCTTCTGGATATTGTAGTCGGA-AAGAGTACGACCATCTTCCAGCT 664004 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||||||| || | || |||||||||||||| || | | |||||| ||| || | Sbjct 664003 GCTTACCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTATCCTGGATCT 663944 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | | || || |||| | ||| || | ||| ||||| ||||| | Sbjct 663943 TAGCCTTTACATTCTCGATAGTGTCGGATGGCTCGACTTCAAGTGTGATGGTCTTACCAG 663884 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || || || |||||||| Sbjct 663883 TCAGAGTCTTGACGAAGATCTGCAT 663859 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||||| ||||| || ||||| || || | || || | || |||||||| Sbjct 663378 ATGAAGAGTGCTTTCCTTCTGGATGTTATAGTCCGACAGGGTACGACCATCTTCCAGCTG 663319 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || |||||||||||||| ||| | || |||||| ||| || || Sbjct 663318 CTTACCGGCGAAGATCAAACGCTGCTGATCTGGCGGGATACCTTCCTTATCCTGGATCTT 663259 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | ||||| || | | ||| || | || ||||| ||||| || Sbjct 663258 AGCCTTGACGTTTTCAATGGTGTCAGATGGCTCGACTTCAAGGGTGATGGTCTTACCAGT 663199 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||| Sbjct 663198 CAGAGTCTTGACGAAGATCTGCAT 663175 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || ||||| |||||||| || || ||||||||||| || | || || || | || || Sbjct 664751 ACCAAATGCAGTGTGCTTTCTTTCTGAATGTTGTAGTCGGA-AAGGGTACGGCCATCTTC 664693 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||||| || | || || ||||||||||| || | | |||||| || Sbjct 664692 CAGCTGCTTACCGGCGAAGATCAATCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTG 664633 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | || || |||| | ||| || | || ||||| || Sbjct 664632 GATCTTAGCCTTTACATTCTCGATAGTGTCGGATGGCTCAACTTCCAGGGTGATGGTCTT 664573 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||| ||||| || || || |||||||| Sbjct 664572 ACCGGTCAGAGTCTTGACGAAGATCTGCAT 664543 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| | | || | |||||| ||||| ||||| || |||||||| || | Sbjct 663630 ACCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCGGA 663571 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | || ||||||||||||||| | | || |||||||||||||| | Sbjct 663570 -AAGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGATCTGGAG 663512 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||| ||| || || ||||| | ||||| || | | ||| Sbjct 663511 GGATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATGGTGTCAGATGGCTCGA 663452 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || ||||| || || || |||||||| Sbjct 663451 CTTCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 663403 >seq4622 Length=411747 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| || || || ||| |||||| || |||||||| || | Sbjct 274364 ACCACCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 274423 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | || ||||||||||| ||| || | || |||||||||||||| ||| Sbjct 274424 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGG 274483 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||||| ||||| | | | || ||||||| | || Sbjct 274484 GATTCCCTCCTTGTCCTGGATTTTGGCCTTGACATTCTCGATCGTATCGGACGGTTCGAC 274543 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || || || || || || || || ||||||||| Sbjct 274544 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATC 274592 >seq986 Length=4314454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| |||| || || ||||||| ||||| ||||| || | Sbjct 1408450 TCCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAG 1408391 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||| || ||||| || | || |||||||||| || || || | | Sbjct 1408390 ATCAGACGTTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTC 1408331 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | || ||| ||| | || ||||| ||||| || ||||| |||||| Sbjct 1408330 TCGATGGTGTCTGAAGGCTCGACCTCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACA 1408271 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 1408270 AAAATCTGCAT 1408260 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| |||| || || ||||||| ||||| ||||| || | Sbjct 1408906 TCCTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAG 1408847 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||| || ||||| || | || |||||||||| || || || | | Sbjct 1408846 ATCAGACGTTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTC 1408787 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | || ||| ||| | || ||||| ||||| || ||||| |||||| Sbjct 1408786 TCGATGGTGTCTGAAGGCTCGACCTCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACA 1408727 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 1408726 AAAATCTGCAT 1408716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || ||||||||||||||||||||| | | || | || || Sbjct 1409152 ACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGATAGAGTACGACCATCTTCT 1409093 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| |||||| || |||| | |||||| ||||| || | || |||||||||| Sbjct 1409092 AGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGG 1409033 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | ||||| || | || ||| ||| | || ||||| || Sbjct 1409032 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCCAGAGTGATGGTCTTG 1408973 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || ||||| || |||||||| Sbjct 1408972 CCAGTCAAGGTCTTCACGAAGATCTGCAT 1408944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421226777566757