Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq606 585 2e-162 seq818 143 2e-29 seq809 136 2e-27 seq710 109 3e-19 seq378 107 1e-18 seq1991 98.7 6e-16 seq497 87.8 1e-12 >seq606 Length=129304 Score = 585 bits (648), Expect = 2e-162 Identities = 883/1249 (71%), Gaps = 6/1249 (0%) Strand=Plus/Plus Query 60030 ATAAATTCAATACGGTCAAAAACTGCTTTAGCAAAATCTTCCGCGGCAATTCGCGCGTTC 60089 |||||||| || || ||||| || ||||| ||||| || || || ||| || || ||| Sbjct 113818 ATAAATTCGATGCGATCAAACACCGCTTTTGCAAAGTCCTCTGCCGCAGAGCGTGCATTC 113877 Query 60090 TTCAATGCATCAGCACTACCAACATACGTTGCCGGGTTAGCTGAAATAACAGTGTCAAAA 60149 |||||||| ||| ||||| ||||| |||| |||||||| || ||||| || || || Sbjct 113878 TTCAATGCCTCACTGCTACCGACATAGGTTGAAGGGTTAGCAGAGATAACTGTATCGAAC 113937 Query 60150 GACTCGCCGCAGCGTTCAAAACCGTCAAGGCGAGGGAGGAAGACATCAAGCATATCCCCA 60209 ||||| || || || || || || ||||| || || || | ||||||||||||| || Sbjct 113938 GACTCACCACAACGCTCGAAGCCATCAAGACGTGGCAGCGCGGCATCAAGCATATCTCCG 113997 Query 60210 CCGAACACTTCTTTAGCCAGGCTATGGCAATACTTATGGTCTGCCTTGTTACTCAACTTG 60269 || || | ||||| || || || ||||| || ||||| | ||| || || ||| Sbjct 113998 CCAAAAATCTCTTTCGCGAGACTGTGGCACACTTTGTGGTCAGGCTTATTGGACAGTTTG 114057 Query 60270 GACATAAAACCAATGTTAGTCGCAAGCTGGCACTCGCAGCCTTCATCCGAAATGAGTTTC 60329 ||||||||||||||||| | | | |||||| || ||| | | |||| | Sbjct 114058 GACATAAAACCAATGTTTCCCTGTAACCGGCACTGACAACCTGAAGCATTGATGATGCTG 114117 Query 60330 ACCAACTCAGGAAGGCGGGCAACGTATTTAAGCGATGAGTGGAAATCGACAGTTGCTGGC 60389 |||| || || | || | | ||| || | | ||||| ||||| || ||| || Sbjct 114118 ACCAGTTCGGGTAAACGAGTCAAGTACTTCAAAGTAGAGTGAAAATCAACCTGTGCAGGA 114177 Query 60390 GGCAGAGGTGTAAACAGTATATTGGCCGAGGCCAAAGCATTTTTCAGGAAGGCGTCAAGG 60449 || | ||||| | ||| | || ||| | || | |||||||| ||||| ||||| | Sbjct 114178 GGGATCGGTGTCATCAGGAGATCGGCGGCCGCAATCGCATTTTTAAGGAATGCGTCCAAA 114237 Query 60450 TGAGGACCACTATCAACGAGGATAAAGTCATAATCGCTCTTCAGCTTATCAATCACATTT 60509 ||||||||||||||||| | |||||||||||||||| ||||||||||||||| | || Sbjct 114238 TGAGGACCACTATCAACAAAGATAAAGTCATAATCGGACTTCAGCTTATCAATGATGTTC 114297 Query 60510 TCTTTCAGGACAGCATGGATGTTCTGACCCGGTAGATGCTCATTGCACAGCTCTCTCCAA 60569 || | | ||| ||| || || || || |||||||| |||| || ||| Sbjct 114298 TCGCGTAAAATAGCGTGGGGATTTTGCCCAGGCAGATGCTCGGCACACAAACCTTCCCAT 114357 Query 60570 TCGGATGCAATAAAGGCATCGTCAATCGACGCAGGCATAACGTCAACCCCAGGTACAACA 60629 | || || || |||||||| ||||| || ||||| | ||| ||||| ||||| |||||| Sbjct 114358 CCTGAAGCGATGAAGGCATCATCAATAGAAGCAGGGAGAACATCAACACCAGGAACAACA 114417 Query 60630 GAAGGAACAATAAACTCCTCTAACAGCTCTTCACGGCTTACATTCTGCAACATAGCCTGT 60689 ||||| || || ||||| | | || ||||||||| || |||||||| | ||||||||| Sbjct 114418 GAAGGCACGATGAACTCGTTGAGCAACTCTTCACGACTGACATTCTGGAGCATAGCCTGG 114477 Query 60690 GCAGATGTTGCGTTTACGATACCAATAGAGTGTTTATGGCTTAAAAACATCGTTGCTGAA 60749 || || |||| | || | || | || | | ||| | |||||||| || ||||| Sbjct 114478 GCTGACGTTGTCTCAACCAAGCCCACAGCACGAGTGTGGTTCAAAAACATGGTCGCTGAT 114537 Query 60750 GATTGCGGATCAAGGTCAATAACCAGAATCCTTAAATCCTCCATAAGAAGATGAGGGTGA 60809 ||||||||||| | || |||||||| | | |||||| || ||| || |||| || Sbjct 114538 GATTGCGGATCTAAATCGATAACCAGTACGCGTAAATCTTCATAAAGTAGGTGAGTATGG 114597 Query 60810 GCACGCATTGCATGCGCCAGAGAAACCGTCGATACAGTTTTTGACACACCGCCTTTAAGA 60869 ||||||| ||| || ||||| || || || || || || ||||||||||| ||||||||| Sbjct 114598 GCACGCAGTGCGTGAGCCAGTGATACTGTAGAAACGGTCTTTGACACACCACCTTTAAGA 114657 Query 60870 TTGGAGATGAAAAT-CACATACGCTTCGCTGTAGCGATCCCGGTATTTTGGCACTCCGCG 60928 ||| | |||||| ||| ||| || | |||||| || |||||||| || ||||| Sbjct 114658 TTGCCAACGAAAATAGTCAT-CGCCTCAGGATGGCGATCGCGATATTTTGGTACACCGCG 114716 Query 60929 ATGTTCATATATGTCAATGATGTTCTGAATTGACATCGCATATTTCATTGAAGAGCCAGC 60988 ||| | ||| || || || || ||||| | || ||| || || || |||| || || || Sbjct 114717 ATGATGATAAATATCGATAATATTCTGGACTGTCATGGCGTACTTTGTTGACGAACCTGC 114776 Query 60989 AGGGCGTTTATCGAAAACATAACCCTTTTCTTCCATTTCACTTACGGCATAGTCAACGTT 61048 || || || || |||| ||| || || | |||||| ||||| || |||||||| ||||| Sbjct 114777 AGCACGCTTCTCAAAAATATAGCCATTGTTTTCCATCTCACTCACCGCATAGTCCACGTT 114836 Query 61049 CGCTCGAGTCAGTAGAGGCAATTTTGCCAGTGCCGCTTTCGCATAGACCTGGTAAAACTC 61108 || ||||||||| || || || || | || || || ||||| ||||| || |||| Sbjct 114837 GGCGCGAGTCAGTTTTGGAAACTTGGCAACAGCAGCCTTGGCATATACCTGAAAATACTC 114896 Query 61109 GTTCGCGTGTAGCTCATCCTTTTGCAACTGTACTTGTTCAGTCAGAACATTGAGCATTCT 61168 ||| | | || || ||||| || | |||| |||||||||| | | ||||| | Sbjct 114897 GTTTTCCTTGAGTTCTTCCTTCTGAGATTGTATCTGTTCAGTCAACGCCGTCAGCATCTT 114956 Query 61169 GTTTGCTCTTTGAGCAACCTTGTGAAGCTGGCTG-GAATCACTCATC--GAAAGTCATCC 61225 | || | ||| |||||||| | | | | || ||||| | ||| ||| || | Sbjct 114957 TTCAGCACGTTGTGCAACCTT-TTCTGTTTGATGAGAATCCATAATCAACAAAAACACCT 115015 Query 61226 TTTATGCTGTATTTTTGAATTTAATTAAAAATGCTGCATAAAATAATAA 61274 |||||| | | | ||||| ||| || ||| || ||||||| || || Sbjct 115016 TTTATGTAATTTGTATGAATAAAATCAATAATCCTACATAAAAAAACAA 115064 >seq818 Length=58372 Score = 143 bits (158), Expect = 2e-29 Identities = 243/352 (69%), Gaps = 0/352 (0%) Strand=Plus/Plus Query 21052 TGGCACAACGCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGA 21111 ||||| | || || ||||||| ||| | || |||| | | ||||||| | || ||| Sbjct 55978 TGGCAGAGCGTGGCGTAAACAGAGTGACATTGGTTGGCAACTTGGGGCAGGCTCCCGAGG 56037 Query 21112 TCAGGTATATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCAT 21171 | | ||||| || |||||||||||||| | | | | | ||||| |||| ||| Sbjct 56038 TGCGTTATATGCCGAATGGCGGCGCGGTAGCCAATTTGACGCTGGCAACCTCTGAAACAT 56097 Query 21172 GGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGT 21231 |||| ||||| || || || | |||| ||| | || ||||||||| || || |||| Sbjct 56098 GGCGTGACAAACAGACCGGTGAGCAGAGAGAAAACACGGAATGGCATCGTGTGGTCTTGT 56157 Query 21232 TCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCG 21291 |||| ||||| || ||||| || | |||||| | | || || || ||||| ||||||| Sbjct 56158 TCGGGAAACTCGCGGAAATCGCCGGAGAGTATCTCCAGAAGGGATCACAGGTTTACATCG 56217 Query 21292 AAGGGAAACTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGG 21351 ||||| | | ||||| || ||| || || || || ||| ||||| | || | Sbjct 56218 AAGGGCAGTTGCGTACCCGGAACTGGCAGGACGATGCAGGCGTAACGCGTTATATCACCG 56277 Query 21352 AAATTATCGTCAGCCAGGGCGGCACCATGCAAATGATCGGCGCTCGCCGTGA 21403 | ||| ||||||| ||| ||||| | || ||| | || |||||||| Sbjct 56278 AGATTGTCGTCAGTCAGAAAGGCACTCTACAGATGTTGGGAAGCCGCCGTGA 56329 >seq809 Length=68953 Score = 136 bits (150), Expect = 2e-27 Identities = 229/331 (69%), Gaps = 3/331 (1%) Strand=Plus/Minus Query 72256 TGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACGC 72315 |||| || | ||||||||||| | ||||| ||| | | | || ||||| || | Sbjct 59783 TGATCCTGCTGGACTACCTGCAGTTGATGCGTTGCCCTGGTCAG---GAGAACCGGACAC 59727 Query 72316 TGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGG 72375 |||||||||||||||||| || || ||||||||| |||||||||| | || | Sbjct 59726 AGGAAATTGCCGAGATTTCGCGTTCGCTGAAGGCGCTGGCGAAGGAGATCGGTTGCCCCG 59667 Query 72376 TGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAA 72435 |||| || | ||||| ||||| || | || || || | ||| ||||| || | Sbjct 59666 TGGTCGCCCTCTCACAGCTTAACCGCGCCCTCGAGAGCCGGGTGGATAAACGTCCCAATA 59607 Query 72436 ATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGT 72495 | || | || || || || ||| | |||||||| || || |||| |||||| | | Sbjct 59606 ACGGTGACCTGCGGGATTCCGGGGCATTGGAGCAGGATGCTGATGTGATCATGTTTGTCT 59547 Query 72496 ATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCG 72555 | || || || ||||| || | ||| || ||||||||||| | ||||||| Sbjct 59546 ACCGTGATGAGGTTTACGACGAACACAGCCCGGATAAAGGCATTGCCGAACTGATTATCG 59487 Query 72556 GAAAGCAACGAAATGGCCCAATTGGCACGGT 72586 | ||||| || |||||||| ||||||||||| Sbjct 59486 GCAAGCAGCGCAATGGCCCCATTGGCACGGT 59456 >seq710 Length=104226 Score = 109 bits (120), Expect = 3e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 67009 GCCCAATACTTCGGAGTGGCACAACGACGCCGACGCGTGTTTGTTGTCGCAAGTGCTCGA 67068 || |||| ||||| || ||||||| ||| | ||||| ||| ||||||||||||||||| Sbjct 59944 GCTCAATTTTTCGGCGTCCCACAACGGCGCAGGCGCGTCTTTCTTGTCGCAAGTGCTCGA 59885 Query 67069 ACAGACCTCGATCCCGCAACGGTACTTTTTGAGTTCGAAGGCGTGCGCCGGAATATTGCG 67128 ||||||||||||||||| | ||| | |||||| | | ||| ||| ||| || ||||| Sbjct 59884 ACAGACCTCGATCCCGCCGCAGTATTATTTGAGCCCCACGGCCTGCAGCGGCATTTTGCG 59825 Query 67129 CCG 67131 ||| Sbjct 59824 CCG 59822 >seq378 Length=222826 Score = 107 bits (118), Expect = 1e-18 Identities = 211/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 31735 GGATGTGAGCTAATTTTTGAGGACAAGGCGAGCGGCAAAAAGGCTGAGCGCCCTGGGTTA 31794 |||||| | | |||| |||||||||| |||||| | ||| || || || || | Sbjct 57951 GGATGTAAACAGGTTTTCGAGGACAAGGTGAGCGGAACGCGGGCGGACCGGCCCGGCTGG 58010 Query 31795 AAAAAGGTACTCCGTATGCTTTCCAGAGGTGATACCCTGGTCGTATGGAAGTTAGACCGT 31854 | | | ||| ||||| | || || ||||||||||| |||||| | ||||| Sbjct 58011 ACCACGACGCTCGAGATGCTGCGCGAGGGCGACACCCTGGTCGTCTGGAAGCTCGACCGG 58070 Query 31855 CTTGGGCGCAGCATGCGTCACTTAGTTGTGCTGGTGGAAGAGCTGCGTGACAGA---GGC 31911 || |||||| | | || || || | ||||| | || |||| |||| ||| Sbjct 58071 CTGGGGCGCTCGGTCAGGCAGTTGGTCGATCTGGTCGGCGATCTGC---ACAGGCACGGC 58127 Query 31912 ATTAACTTCCGGAGTCTCACTGACTCCATCGACACCAGTACACCAATGGGGCGCTTTTTC 31971 | | ||| |||| || || ||| ||||||||||| | | || || || || ||| Sbjct 58128 GTCCAGTTCAGGAGCCTGACCGACGCCATCGACACCGGCGCGCCTTCCGGCCGGTTCTTC 58187 Query 31972 TTTCACGTAATGGGGGCGCTGGCAGAAATGGAACGTGAGCTTATCGTTGAACGTACACGC 32031 || ||||| |||| | |||||| ||||||||||| || || | ||| || || || ||| Sbjct 58188 TTCCACGTCATGGCGAGGCTGGCCGAAATGGAACGCGAACTGACCGTCGAGCGGACCCGC 58247 Query 32032 GCTGGACTTGA 32042 || ||||| || Sbjct 58248 GCCGGACTGGA 58258 >seq1991 Length=9072 Score = 98.7 bits (108), Expect = 6e-16 Identities = 228/344 (66%), Gaps = 10/344 (3%) Strand=Plus/Plus Query 72253 GCATGATTATGATCGACTACCTGCAACTTATGCGC--------GTCCCCGAGCTGCAAGA 72304 || |||| || ||||||||||||| || ||| || ||| |||||| | || Sbjct 5005 GCCTGATCGTGGTCGACTACCTGCAGCTGATGAGCGGCTCGGGGTCGTCGAGCTCC--GA 5062 Query 72305 TAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATT 72364 ||||| | ||| | | ||| ||||| || |||||| | |||| ||||| | Sbjct 5063 CAACCGGGCCACCGAACTGGGCGAAATTTCCCGGGGCCTGAAGATGCTGGCCAAGGAGCT 5122 Query 72365 ACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAA 72424 ||| |||||| | || |||| || || || || ||| | || ||||| | ||||| Sbjct 5123 GCAATGCCCGGTGATCGCGCTGTCGCAGCTCAACCGCTCGGTGGAGCAGCGCACCGACAA 5182 Query 72425 ACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGAT 72484 || || | | || | || ||||| || || || |||||||| || ||| | || Sbjct 5183 GCGGCCCATGATGAGCGACCTGCGCGAATCGGGCGCCATCGAGCAGGATGCGGACATCAT 5242 Query 72485 TATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGA 72544 ||||| | || |||||||| || || ||| ||| | | | ||| ||||| Sbjct 5243 CATGTTCATCTACCGCGACGACTACTACAACAAGGACAGCAAGGAGCCGAACATCGCCGA 5302 Query 72545 GGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGA 72588 ||| || ||||| ||||| || || ||||| | ||||| |||| Sbjct 5303 GGTGATCATCGGCAAGCAGCGTAACGGCCCGACCGGCACCGTGA 5346 >seq497 Length=2397010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 22989 AGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCG- 23047 ||||||||| || || || |||| || ||| ||||| |||||||||| |||||||| | Sbjct 99654 AGCCCCGACATAGCCACATTGTTGGTGCATCTCCGCACAGACGATGAAGTCACTGCACAA 99713 Query 23048 GCTGTATGCGCGAGGTTACCGACTGC-GGCCTGAGTTTTTTA 23088 |||||||||||| |||| | ||| | | ||| ||||||||| Sbjct 99714 GCTGTATGCGCGTGGTTCCATACTCCAGCCCTAAGTTTTTTA 99755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303217619654997