Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3016 104 1e-17 seq4288 100 1e-16 seq4555 98.7 5e-16 seq1974 96.9 2e-15 seq42 95.1 6e-15 seq3223 93.3 2e-14 seq1 93.3 2e-14 seq4372 89.7 3e-13 seq4512 87.8 9e-13 >seq3016 Length=1233783 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | ||||| | || |||||||||| ||||||||||||||||||||||| Sbjct 353456 TAAAAAAACT--TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 353513 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 |||||| ||||||||||||| ||||||||||| Sbjct 353514 CGCTCTAACCAACTGAGCTATGGGGCCGTCGAC 353546 Score = 87.8 bits (96), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 352913 AAAAAAACGA--TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 352970 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| ||||||||||||| Sbjct 352971 GCTCTAACCAACTGAGCTA 352989 >seq4288 Length=3200609 Score = 100 bits (110), Expect = 1e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| | ||||| | || |||||||||| |||||||||||||||||||||| Sbjct 1788050 ATAAAAAATATACTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACG 1788109 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||| | |||| Sbjct 1788110 ACGCTCTAACCAACTGAGCTATGGAGCCG 1788138 Score = 89.7 bits (98), Expect = 3e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | |||| | || |||||||||| |||||||||||||||||||||| Sbjct 1775229 ATAAAAAAGACTACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACG 1775170 Query 11502 ACGCTCTRACCAACTGAGCTA 11522 ||||||| ||||||||||||| Sbjct 1775169 ACGCTCTAACCAACTGAGCTA 1775149 >seq4555 Length=522620 Score = 98.7 bits (108), Expect = 5e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 11430 AATATAGA-ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| || | | |||||||| || ||||| | || |||||||||| ||||||||| Sbjct 138768 AATATCGATAGTGATAAAAAAAGAA-TTGGCTCCAGAGAGGATCGAACTCACGACCTTCG 138710 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| ||||||||||||| | |||| Sbjct 138709 CGTTATTAGCACGACGCTCTAACCAACTGAGCTATGGAGCCG 138668 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 304716 AAAAAATATACTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 304657 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| ||||||||||||| Sbjct 304656 GCTCTAACCAACTGAGCTA 304638 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 306991 AAAAAAAAAGATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 307050 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| ||||||||||||| Sbjct 307051 GCTCTAACCAACTGAGCTA 307069 >seq1974 Length=1636816 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 815131 AAAAATGAACATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 815072 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| ||||||||||||| Sbjct 815071 GCTCTAACCAACTGAGCTA 815053 Score = 89.7 bits (98), Expect = 3e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 838721 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 838780 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 838781 CTGAGCTA 838788 Score = 87.8 bits (96), Expect = 9e-13 Identities = 69/81 (85%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 11443 TAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| || | |||| | || |||||||||| |||||||||||||||||||||| Sbjct 560158 TAAAAAA--AAGTATGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACG 560215 Query 11502 ACGCTCTRACCAACTGAGCTA 11522 ||||||| ||||||||||||| Sbjct 560216 ACGCTCTAACCAACTGAGCTA 560236 >seq42 Length=1152622 Score = 95.1 bits (104), Expect = 6e-15 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | || ||||| | || |||||||||| |||||||||||||||||||||| Sbjct 793050 ATAAAAAGT-AACTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACG 793108 Query 11502 ACGCTCTRACCAACTGAGCTA 11522 ||||||| ||||||||||||| Sbjct 793109 ACGCTCTAACCAACTGAGCTA 793129 >seq3223 Length=1140138 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||||| |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 329633 AAAATATCAA--TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 329690 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| ||||||||||||| Sbjct 329691 GCTCTAACCAACTGAGCTA 329709 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/79 (85%), Gaps = 4/79 (5%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||| |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 258728 AAAAAATC----TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 258673 Query 11504 GCTCTRACCAACTGAGCTA 11522 ||||| ||||||||||||| Sbjct 258672 GCTCTAACCAACTGAGCTA 258654 Score = 87.8 bits (96), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||| | || |||||||||| ||||||||||||||||||||||||||||| | Sbjct 279901 AAATGTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAA 279842 Query 11511 CCAACTGAGCTA 11522 |||||||||||| Sbjct 279841 CCAACTGAGCTA 279830 Score = 87.8 bits (96), Expect = 9e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 284756 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 284697 Query 11516 TGAGCTA 11522 ||||||| Sbjct 284696 TGAGCTA 284690 Score = 87.8 bits (96), Expect = 9e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 306825 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 306884 Query 11514 ACTGAGC 11520 ||||||| Sbjct 306885 ACTGAGC 306891 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 515642 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 515701 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| | |||| Sbjct 515702 CTGAGCTATGGAGCCG 515717 >seq1 Length=5856339 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||||||| | || |||||||||| |||||||||||||||||||||||||| Sbjct 5700167 AAAAT--AATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGC 5700224 Query 11506 TCTRACCAACTGAGCTA 11522 ||| ||||||||||||| Sbjct 5700225 TCTAACCAACTGAGCTA 5700241 Score = 87.8 bits (96), Expect = 9e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5728875 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5728934 Query 11516 TGAGCTA 11522 ||||||| Sbjct 5728935 TGAGCTA 5728941 >seq4372 Length=719298 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 60356 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 60297 Query 11515 CTGAGCTAATGGGCCGTCGACGATTG 11540 |||||||| | ||| | || | ||| Sbjct 60296 CTGAGCTATGGAGCCATTGATGCTTG 60271 >seq4512 Length=2917482 Score = 87.8 bits (96), Expect = 9e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1774549 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1774608 Query 11516 TGAGCTA 11522 ||||||| Sbjct 1774609 TGAGCTA 1774615 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261476039802532