Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq476 185 4e-42 >seq476 Length=182463 Score = 185 bits (204), Expect = 4e-42 Identities = 213/287 (74%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 11207 TCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCT 11266 |||||| |||| ||||||||||||||| | ||||||||||||||||||| ||| |||| Sbjct 52935 TCGGTGGTGTAACGGTCCTGGCCGTCCTTGTCCTGCCACTTGCGGGTGCGCAGGGAGCCT 52876 Query 11267 TCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCA 11326 || | || |||||| |||||| |||||||| || | ||||| ||||| ||| ||| Sbjct 52875 TCCACATACACCTGGCTGCCCTTGCGCAGGTACTGGCCGGCGATCTCGGCGAGCTTGCCG 52816 Query 11327 AAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTC 11386 |||| ||| || |||||||| |||||| ||| ||| | |||||| |||||| | Sbjct 52815 AAGAACACCACGCGGTGCCATTCGGTGGCCTCGCGCTTTTCGCCGGTGGCCTTGTCGCGC 52756 Query 11387 CAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTT 11446 ||| | ||| | |||||||| ||| | | || ||| | |||| ||||| | | Sbjct 52755 CAGTTGTCGGTGGTGGCCAGCGTGATGTTGCAGATCGCGTCGCCGCTCGGGGCGTAGCGG 52696 Query 11447 GCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCAC 11493 | || || |||| |||||||| ||||| || || |||||||| || Sbjct 52695 GTTTCGGGGTCCTTGCCCAGATTGCCGATAAGAATCACCTTGTTGAC 52649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208487112063412