Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq538 156 2e-33 >seq538 Length=154069 Score = 156 bits (172), Expect = 2e-33 Identities = 219/304 (72%), Gaps = 5/304 (2%) Strand=Plus/Plus Query 9030 CAGGCCGCCGCCACCATGCGGATGGGAGGTGGCATCGGCTACGACTTCTCCACCCTCCGT 9089 ||| |||||| |||||||| || || ||| ||||||||||||||||| || |||| Sbjct 117473 CAGTCCGCCGAGACCATGCGCCGCGGCGGCGGCGTCGGCTACGACTTCTCCTCCATCCGC 117532 Query 9090 CCCAACGGAGCCCTCATCAAGAAGCTCC-AGTCGCGGTCCTCCGGGCCGCTCTCCTTCAT 9148 ||||| || || | | | || || |||| ||||||| ||| |||||| ||| Sbjct 117533 CCCAAGGGCGCGATGGTGC-GCGGCACCCAGTCCAACGCCTCCGGCCCGGTCTCCTACAT 117591 Query 9149 GCAGATCTACGACTCCGTGTGCAAGTGCGTCGCCAGCTCTGGCCACCGCCGTGGCGCGCA 9208 || | | |||| | ||| || ||||| | | ||| |||||| ||||| || Sbjct 117592 GCGCGTGTTCGACCGCTCCTGCGAGACCGTCGAATCCGCCGGCTCCCGCCGCGGCGCCCA 117651 Query 9209 GATGGGCGTCCTCCGAGTGGACCACCCGGACATCGAGGAGTTCATTCGCGCCAAGCACAA 9268 ||||||||| || || |||||||||||||||||||| ||||| | ||||||| || | Sbjct 117652 GATGGGCGTGCTGCGCTGCGACCACCCGGACATCGAGGAATTCATCCACGCCAAGGACCA 117711 Query 9269 CGAGGACAACCTCACCGGGTTCAACACCTCCATCGCCATCACCGACCGCTTCATGGAGTG 9328 | | | |||||||| |||||| |||||||||| | ||||||| |||||| || Sbjct 117712 C---GGCGACCTCACCAACTTCAACGTCTCCATCGCCGTGACCGACCTGTTCATGCAGGC 117768 Query 9329 CGTC 9332 |||| Sbjct 117769 CGTC 117772 Score = 120 bits (132), Expect = 1e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 9397 ACCTCTGGGAGATGATCATGCGGTCCACGTGGGACTGGGCCGAGCCCGGCACCCTGTTCA 9456 |||| ||||| | ||||||| ||||| | ||| ||||| || |||| ||||||| Sbjct 117891 ACCTGTGGGATCAGGTCATGCGCTCCACCTACGACCACGCCGAACCGGGCATCCTGTTCC 117950 Query 9457 TCGACCAGATCAACCGCATGAACAATCTCAAGTACTGCGAGACCATCGCCGCCACCAATC 9516 |||||| || ||| ||||| || | |||||||||||||||| |||||||| | Sbjct 117951 TCGACCGCATGAACAAGGACAACAACCTTTACTACTGCGAGACCATCGAGGCCACCAACC 118010 Query 9517 CCTGCGGCGAGCAGCCCCTCCCACCGTACGGTGCCTGCCTCTTGGGCTCCTTCAACCTC 9575 |||||| |||||||||||| || | ||||| |||| | ||||||| |||||||| Sbjct 118011 CCTGCGCCGAGCAGCCCCTGCCGTCCTACGGCTGCTGCTGCCTGGGCTCGATCAACCTC 118069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203540198881970