Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4280 471 5e-128 seq98 185 1e-41 seq4600 149 8e-31 seq4284 107 2e-18 >seq4280 Length=912600 Score = 471 bits (522), Expect = 5e-128 Identities = 885/1290 (69%), Gaps = 27/1290 (2%) Strand=Plus/Minus Query 62576 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62635 ||| || ||||| | || ||||| || || | |||||| || || ||||| ||||| || Sbjct 357167 ATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATA 357108 Query 62636 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 62695 || || ||||||||||| | || ||| || | ||| ||||| ||| || | ||||| Sbjct 357107 GTAGATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGGATA 357048 Query 62696 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62755 | | | ||| || || || || | ||| || ||||| || ||||| || | || | Sbjct 357047 ACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCG 356988 Query 62756 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62815 | |||| || | || ||||| | ||||| ||||||| || || ||||| ||||| Sbjct 356987 CATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAG 356928 Query 62816 ATTTCT---GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62872 ||| | | ||||| |||| | || || |||||||| | |||||| || | || Sbjct 356927 ATTCTTAGTGGCAATT--TTTG-CTACTTCTTTCAGTTTTTGGAAATCATATGTCTTGTC 356871 Query 62873 ---TATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TA 62927 | | || ||||||||||| || | || || || |||||||| || | |||| | Sbjct 356870 GGGTTTCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCTT 356811 Query 62928 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 62987 | | | |||| | || || |||||||| || |||||||| ||||| | || Sbjct 356810 GGAGGAG--TATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTTC 356753 Query 62988 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63047 || |||||||| || |||| || ||||||||||| || ||| | ||| ||| ||||| Sbjct 356752 TGCTGATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTCC 356693 Query 63048 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC-T 63106 | || || || || || || ||| | || | || || | | | |||||| | Sbjct 356692 ACTTGGGACTCGATGATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAATGTATCGT 356633 Query 63107 CCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 63166 |||| | ||| ||||| ||| |||| | ||| ||||| || ||||| |||| | Sbjct 356632 CCTTCCGCTT-CGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATG---TGTCGGA 356577 Query 63167 T---CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63223 | ||||||||||||| || |||||||| |||| ||| ||| | ||| |||||| || Sbjct 356576 TAGCCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCTT 356517 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT---ATGTTCCTC 63280 ||| || | ||| ||||||||||| || || | || |||| || || ||| | Sbjct 356516 CATGAACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAGC 356457 Query 63281 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63340 | || || ||||| || | ||| |||||| | | || ||| |||||||||||| | Sbjct 356456 G---CCGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGAG 356400 Query 63341 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63400 || ||||| | | || ||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 356399 ATAAATGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGTT 356340 Query 63401 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63460 ||| || || |||||||| ||||| | |||||| || || || || || || | || || Sbjct 356339 ATTGTACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGTA 356280 Query 63461 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63520 | |||| | || | || | || || || ||||| || ||| ||| || || Sbjct 356279 GGTTCCCTTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAAT 356220 Query 63521 TAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580 || || || | || || ||||| ||||| ||||| ||||| || ||| ||||| | | Sbjct 356219 CAACGCACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCAA 356160 Query 63581 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640 || || ||| |||| || | || | || |||| ||| | || || ||||| Sbjct 356159 CAGGAAGCAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAGC 356100 Query 63641 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63700 || || || || | || || || | ||||||||||||||| || | ||| ||||| Sbjct 356099 ATGAGTGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTTC 356040 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 || ||||| | || || ||||| ||||||||||| || | ||| ||||||||| Sbjct 356039 GCCGTGGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGCC 355980 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63820 || || || | ||| || ||| ||||| || || || || |||||||| || ||| Sbjct 355979 TTTGATCTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAAA 355920 Query 63821 GTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 ||| || |||||||| ||| |||| || || Sbjct 355919 GTCCCGATCGTAAATGATAGCCGAATTCAG 355890 >seq98 Length=5729030 Score = 185 bits (204), Expect = 1e-41 Identities = 576/885 (65%), Gaps = 9/885 (1%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| ||| || || || || || || || || || || |||||||| ||||| Sbjct 2603155 CATAACACCCCACTTCTGATACTCTCCTACTTTCTTCTCAAAGAAGTTAGTTTTACCTTC 2603214 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 | || || ||||| ||| ||| ||||| | ||| ||||| || | | | Sbjct 2603215 AAGCGAAATGAACTCCATAAAACTAAAGGGATTCTTCGTATTGTAAATCTTATCGATGAC 2603274 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 ||| || | || || ||| || |||||||| ||||| || | |||||||| Sbjct 2603275 CAACTCGAGCAGCAGTCCATCAGCCACGAATTCAATATACTGCGACAAAAGGTCACAATT 2603334 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||| || | || | ||| ||||| | || || ||||| |||| || || | Sbjct 2603335 CATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGGAATTCCTGTTTGATCAGGACTGT 2603394 Query 33240 ATCTGTTATAA--TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 33297 || |||| | |||| | | ||||| ||| || | | || ||| ||| Sbjct 2603395 TTCGCGGATAAACTCGATCACATG--TTCTTGTGATGGTTTCTGTACCAGATATTTGAAC 2603452 Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 || | | | | || || |||||| || ||||| | || | ||||| ||| || Sbjct 2603453 ATAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACGTGAGATCAATTCGTAGGAGAAT 2603512 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || || ||| | || |||||||| || | |||| ||||| ||||| |||| Sbjct 2603513 GTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATGGATGCGAAACTTCCACTG 2603572 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT-- 33475 ||||| ||| |||| || | || ||||| | | | ||||| | ||| | | Sbjct 2603573 AAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTG 2603632 Query 33476 CATGTAT-CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 | || || ||| || | | | || || ||||| || ||||| |||| | || ||| Sbjct 2603633 CTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATG 2603692 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 ||||| || | || | ||| || ||| || |||||||||||| | || Sbjct 2603693 GCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATAAGCAGCGAG 2603752 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| || | |||||| || ||||| |||||||| ||||| || | |||||| Sbjct 2603753 TACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCATAGAAGCAACGTGCCTCG 2603812 Query 33655 GTAATCTGTA-CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 || | ||| | || ||| ||| |||||| | | || || |||| | || || Sbjct 2603813 GTGACCTGGAGCTCCTGGCTGAAA-CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGA 2603871 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33773 || |||| || |||||||||||| || || | || ||| ||| | || || | Sbjct 2603872 AGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTC 2603931 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 |||||| | ||||||||| | ||| ||||| || | |||||| | ||||||||||| Sbjct 2603932 CCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGC 2603991 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || || ||||| | ||| ||| ||| ||| ||||| |||||||| Sbjct 2603992 CTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAAAT 2604036 >seq4600 Length=436310 Score = 149 bits (164), Expect = 8e-31 Identities = 263/381 (69%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 33499 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 33558 || || ||||| || ||||| |||| | || |||||||| || | || | ||| Sbjct 110435 TCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGT 110494 Query 33559 TTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 33618 || ||| || |||||||||||| | || |||||||| || | |||||| Sbjct 110495 TTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCC 110554 Query 33619 ATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAA 33677 || || || |||||||| ||||| || | |||||||| | ||| | || ||| ||| Sbjct 110555 ATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA 110614 Query 33678 TCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33737 |||||| | | || || |||| | || || || |||| || ||||||||||| Sbjct 110615 -CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATG 110673 Query 33738 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 33797 | || || | || ||| ||| | || || | |||||| | ||||||||| | Sbjct 110674 TGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAG 110733 Query 33798 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTC 33857 ||| ||||| || | |||||| | ||||||||||||| || ||||| | ||| ||| | Sbjct 110734 ATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCC 110793 Query 33858 ATAATATTGGATTGGGAAAAT 33878 || ||| ||||| |||||||| Sbjct 110794 ATGATACTGGATGGGGAAAAT 110814 >seq4284 Length=891408 Score = 107 bits (118), Expect = 2e-18 Identities = 276/416 (66%), Gaps = 7/416 (2%) Strand=Plus/Minus Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || |||||| || |||||||| ||||| ||| | ||||||||||| || | || Sbjct 85540 CAGTCTATCAGCCACGAATTCAATATACTGCGACATAAGGTCACAATTCATGCCAAGCAG 85481 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA- 33250 | ||| ||||| || || || || || ||||| || || || || |||| Sbjct 85480 GTCAACCGGAAGGGCTTTCGTCAGGAACTCCTGTTCGATCAGGACTGCTTCGCGGATAAT 85421 Query 33251 -TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 | |||| ||| ||||| ||| || | | || ||| ||||| | ||| || Sbjct 85420 CTCGATCACACG--TTCTTGTGATGGTTTCTGTACCAGATATTTGAACATAAGACAAGCA 85363 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 || || |||||| || ||||| | || | ||||||||| || || || || ||| Sbjct 85362 AAGTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGGC 85303 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 || || |||||||| || | |||||| ||||| ||||| |||| |||||| || ||| Sbjct 85302 ATCAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACCT 85243 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG-TATCCAC 33486 || || || || ||||| | | | ||||| | ||| | | | || ||||| Sbjct 85242 TCCACGGCGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTGCTTGAAATCCAG 85183 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 || ||||| || || ||||| || ||||| |||| | || ||||| || || Sbjct 85182 TTCAATGCCCAGTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCGTTGAA 85127 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 |||||||| || | || |||||||| || | ||||| || || || |||||| Sbjct 84830 TAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGAAAT 84771 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 |||||||| || | || ||||| | ||| || || | || |||||| | | || Sbjct 84770 CCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTC 84711 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753 || ||||| || || || || ||||| || |||| |||||| || || | || Sbjct 84710 TCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTC 84651 Query 33754 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 33813 ||| | | | || || | |||||| | ||||||||| | ||| ||||| || ||| Sbjct 84650 TCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACT 84591 Query 33814 GTCCAAAATGATGCCTCTGCCT 33835 ||||| || ||||||||||||| Sbjct 84590 GTCCAGAAAGATGCCTCTGCCT 84569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622910158002120