Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq130 123 2e-23 seq986 91.5 1e-13 >seq130 Length=3389925 Score = 123 bits (136), Expect = 2e-23 Identities = 204/289 (71%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 71654 CAATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGC 71713 || || ||||| || ||| ||||| || | ||||| |||| || ||| | | Sbjct 1199312 CAGTTGGAGCAAGCTCGAACTCATGACGATTTGTGGAACTCTGCACAAATTCAGATGGTC 1199371 Query 71714 AATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGG 71773 || || |||||||| ||||| | | || ||||| ||||| || |||||| | |||||| Sbjct 1199372 AAGGAAGGTAAAATGCACGGCTTTTTGCGAATGTATTGGGCAAAGAAGATTTTGGAGTGG 1199431 Query 71774 ACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATAC-AGTCT 71832 || ||||||| ||| | || || || | ||||| || |||||| | ||| ||| | Sbjct 1199432 ACCAAAACTCCGGAGGAAGCTCTTGAAACGGCAATTTACCTGAACGATCGCTACCAGT-T 1199490 Query 71833 CGACGGTCGCGATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTC-TTCACG 71891 ||||| || || || || ||||| || || ||||||||| |||| |||| | |||||| Sbjct 1199491 GGACGGCCGTGACCCGAATGGTTACGTTGGCTGCATGTGGTCCATT-GCGGGCATTCACG 1199549 Query 71892 ATAGAAGCTTTTTAGAACGTCAAGTGTTTGGTAAAATTCGCTATATGAA 71940 | | | || || |||||||||| ||||||||||| ||||| Sbjct 1199550 ACCAGGGATGGCGTGAGCGGGAAGTGTTTGGAAAAATTCGCTACATGAA 1199598 >seq986 Length=4314454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| |||||| Sbjct 1409004 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 1409063 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| || ||| ||||| || ||||||| | | | | ||| || ||| Sbjct 1409064 CAGCGTCTGATTTTCGCCGGTAAACAGCTAGAAGATGGTCGTACTCTATCCGATTACAAC 1409123 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 |||||||| || ||||| | || ||||||| | || | || ||||| Sbjct 1409124 ATTCAAAAGGAGTCTACCCTTCACTTGGTCCTTCGTCTACGCGGTGGAAA 1409173 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 1408320 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 1408379 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || || ||||| ||||| || | | | | ||||| ||| Sbjct 1408380 CAACGTCTGATCTTCGCTGGTAAACAGCTCGAGGACGGCCGTACTCTGTCTGACTACAAC 1408439 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || || || |||||||| |||||||||| ||| Sbjct 1408440 ATCCAGAAGGAATCTACCCTCCATCTGGTTCTG 1408472 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 1408776 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 1408835 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || || ||||| ||||| || | | | | ||||| ||| Sbjct 1408836 CAACGTCTGATCTTCGCTGGTAAACAGCTCGAGGACGGCCGTACTCTGTCTGACTACAAC 1408895 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || || || |||||||| |||||||||| ||| Sbjct 1408896 ATCCAGAAGGAATCTACCCTCCATCTGGTTCTG 1408928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478633937537040