Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq1398 178 4e-40 seq2015 80.6 8e-11 >seq1398 Length=15916 Score = 178 bits (196), Expect = 4e-40 Identities = 869/1348 (64%), Gaps = 56/1348 (4%) Strand=Plus/Plus Query 27264 CGTGAGCAAAATCCA-TTGGCCGACGCGATGTGCCTGCGCCTGCGACGTGCACCCGAACG 27322 ||| |||| | ||| || ||| ||||| | || || || ||||||||| ||||||| Sbjct 1247 CGTCAGCAGCAGCCACTTTGCC-ACGCGCAGGGCTTGGCTCTCCGACGTGCAACCGAACG 1305 Query 27323 CAGTAACCTGCGTCTTAATGACGCCGTAGCGCGCGATCCCGTCTTCGTCCGGCACGTATT 27382 | || || |||||| |||||||| ||||||| | | | ||||| || ||| Sbjct 1306 CTGTCGTCTCCGTCTTGCGCACGCCGTACCGCGCGACCGCCTGGTCGTCTTGCCAGTACA 1365 Query 27383 CAACGGCTT-GCTTGTACTG-GTTCGCCGGGTCGTTATAGCTGACGAGCGCGACCGTGTA 27440 | || ||| | | | || || | ||| | |||||||| ||||| || || Sbjct 1366 CGAC--CTTCGAGCGGCCAAAGTCCGTCATGTCCGTGTAGCTGACCAGCGCCACAGTCGG 1423 Query 27441 CCGCGTCTTACGCTCGCTGCCGACATACCGGAACGAGCCATCGATCACGTTCGCCGCCGT 27500 || || || |||||| ||| ||| ||||| |||||||||| | ||| Sbjct 1424 GCGATCTTTGCGACGGCTGCCTGAGTACGTGAAGCGCCCATCAATCACGTTCGACTGCGT 1483 Query 27501 GTACACGTACACCGGATCTGACGGCATGTCCGCCGATGCGACGACAGCTCCCGGCCC-CC 27559 |||| |||||| ||||| || ||| || || ||| | | |||||| || Sbjct 1484 GTACGTGTACACAGGATCGCGGGGGCGGTCAGCTACTGGTACGGCTGA-CCCGGCAGACC 1542 Query 27560 AGTAGGCGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGCCG 27619 ||||| | || || ||||| |||| ||| | |||| || || || | || || || Sbjct 1543 AGTAGACCATCCCCCGGAAGACGCCCGCCAAGTCCGTCAGGACGTTATAAGCCTCCGCGC 1602 Query 27620 CCGACTGGATC-ACGCAGTTGCAGGCGAATCGCGGCTC---GACGCCGCCTTTTCCGTCC 27675 || || || |||| |||||| | ||| || |||| | ||| ||| ||| Sbjct 1603 GGGATTGAATATACGC-GTTGCACGTGAAGCGGCGCTCAGTGGCGCTGCCCCGCCCGGTG 1661 Query 27676 GACACCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGAT 27735 | ||||| | || ||||| || |||| || |||||| ||||||||| || | Sbjct 1662 GGCACCAGTTCGTCACAGTACCGACCGATCTCATACAGCGCCCACTTGTTGACCCAGCCC 1721 Query 27736 GCATCGACGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCAC 27795 || || || ||||| |||||||| |||||| | | |||||| |||| |||| Sbjct 1722 GCCGGGATCTTCGACCCGAGGCCGTAGCGGTCGTTCGTGACGATGTCGTAAAAGACCCAC 1781 Query 27796 GCGGGATTGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCCCGAGTACGTGCGC 27855 ||||| || |||| |||||| ||||| ||||||||||| ||||||| || || | Sbjct 1782 GCGGGGTTATTCGAATATGCCGTCTTGAATGTGCCGTCCCAGGTGCCCGCATAGACGCCC 1841 Query 27856 GTCTCAGGATCGTAGTTCGACGGCACACGCA-CGATCAGACCTCGAACGTGGTACGAGCG 27914 || || || ||||||| || || || | | || | ||| | ||| || | || Sbjct 1842 GTGTCCGGGCTGTAGTTCACGGGGACGCGGATCTGTCGGCCCT-TCAGGTGATAGGCCCG 1900 Query 27915 CACCGGGA---CCTGCGAGAACGAGCGCGCGTCGAACGTCATACCCACGAGCGCAGTCAT 27971 | |||| ||| | |||| ||||| | | || || || || | ||| Sbjct 1901 CGTTGGGATGCTCTGGAATTGCGAG---GCGTCTACCTGCACTCCGCAGACAGCCGACAT 1957 Query 27972 CGGATAGCGCAGCTTGCGGTCGATGATTTCGGTGATCGCCTCGATGTTCACCGTGTCGGC 28031 || ||||||||||||| |||||||| |||||| | | |||||| ||||| Sbjct 1958 GGGGTAGCGCAGCTTGCCGTCGATGACTTCGGTCACGGTGTCGATGACAGTGGTGTCTTG 2017 Query 28032 GATC--AGCGAGCTGTGCGCATTCGGCGTAATGCGCCGCACGCGCACCAGCCA----GCC 28085 |||| || | | ||| | ||||| | || || |||||||| ||| ||| Sbjct 2018 GATCGTGGCCACC--CCCGCTTGGGGCGTCAGACGGCGAACGCGCACGGCCCACGATGCC 2075 Query 28086 GGATTTCGCACT-CGGCAGCTCGATCCGATGGGAACGCTCGTACAGCGACGTCGTCTTGC 28144 | ||| || ||||| || || || || | || ||| || ||| ||||||| Sbjct 2076 G-----CGCCCTGCGGCAAGTCAATGCGGTGCGTGCGGCGGTATTGCTGCGTGGTCTTGC 2130 Query 28145 CGTCAAAGGCGCCGCGCAGCACTTCCGCGTACGAGCCCCCGTCAACCGACAGGTCAATCG 28204 | || || || ||||||||| || | | ||| |||||| | || ||| || | Sbjct 2131 CAGTGAATGCAGTGCTCAGCACTTCGGCCCATGCGCCGCCGTCAGTCTGCAAGTCGATAG 2190 Query 28205 CATACTCGACTCGGTA---GCCGAACACGCCGGACGACGGGTCACTCTTCTGCAGCGCAG 28261 | || | || ||| ||||| | ||| || |||| ||| ||||| | Sbjct 2191 CGTATGCTACCGAGTAGCCGCCGATGTCACCGTTAGATGGGTTCTGCTTTTGCAGGCCGT 2250 Query 28262 GCACGCCGAAGCGAATACGGACTGCCGTGAGCTGCGTGTTC-TGCACCTGCCGCACCCAA 28320 ||| |||| | ||||||| || | |||| || | | || || || || ||||| Sbjct 2251 TCACACCGAGGGTGATACGGATGGCGGACAGCTCCGAGCGCGTGAACGTG-CGAACCCAC 2309 Query 28321 GGCGCATCCGACGTCAGCGGGATCC-CAACCGCAG-TTTCGCGCTC---GACCGCCGGAA 28375 || | | ||| | | ||| || || ||| | ||||||| || || || | Sbjct 2310 GG----TGTGCCGTAGACAAGCTCCACACCCACAGACTGCGCGCTCTCAGA-CGAGGGGA 2364 Query 28376 AGCCAGGCATGTAGTCCTGATCCAGCGTTCCCGT-CCGAACGTCGACCGTATAGTTCTGG 28434 ||||||| ||| ||||||| | | | | |||||| || | ||||| | | ||| Sbjct 2365 AGCCAGGGATGAAGTCCTGCTGCTGTG-TCCCGTGGCGTATGTCGAACTGCACGCCTTGG 2423 Query 28435 AAGTTGACCGAGCCGTCGGCATTCTGGATCGGCGTACCGTCGAGGTAGACCGACTGCATG 28494 |||||| ||| ||||| | ||| | | ||||| ||||||||||||||||| || Sbjct 2424 AAGTTGTACGACCCGTCAGGATTGCGCAGGGGCGTCTGGTCGAGGTAGACCGACTCCAGC 2483 Query 28495 CCGTTGACCAGCCCCACGATCGGGCCTTCACCGATGATGTCGAGCACCTTCGCGCG-CGC 28553 ||||| ||||| ||| |||| || ||||| | | || ||| |||| | || ||| || Sbjct 2484 CCGTTAACCAGTCCCTCGATAGGCCCTTCGCTCACGAGGTCAAGCA--TGCGTGCGTAGC 2541 Query 28554 -GGTCGAATGGAGGCTGTCCGGCGACTC 28580 || ||| |||||||| |||||||| Sbjct 2542 TAGTGCTATGCAGGCTGTCGGGCGACTC 2569 Score = 107 bits (118), Expect = 5e-19 Identities = 217/316 (69%), Gaps = 7/316 (2%) Strand=Plus/Plus Query 30378 CGTCGAGATACTTCGCCAGCGTGCGCCGGCGAAACACCTTCGCACCGACCAGATCCTCCA 30437 |||| |||||||| || |||||||| | || | | || || || || || || | Sbjct 4345 CGTCCAGATACTTGGCGAGCGTGCGATGCCGCACGATGCGAGCGCCCACGAGGTCGTCGA 4404 Query 30438 GCGCGACACACATTGCGGTGATCGTGCCGTTGATGTCGCCGACAGTAAGTGTCGGCGCCG 30497 |||| | |||| || | |||||| || | || ||| || ||| || || | | Sbjct 4405 GCGCAATGCACAGCGCCGAGATCGTACCCGATACGTTGCCCACTCGAAGAGTTGGTGTGG 4464 Query 30498 GCTGCCTGGC-GTCC-GACGTCCGTTCGAAACCGGCCGCCTGGATCGGCCACGGCTTGTA 30555 |||| ||| | |||| |||| || ||||||| | | || ||| ||||| |||| ||| Sbjct 4465 GCTGGCTGCCAGTCCCGACG--CGAGCGAAACCCTCGGACTCGATGGGCCAAGGCTGGTA 4522 Query 30556 CTCTTGACCCTGCCACACGATCGA-CGTCGACTGCAGGTGCCCATGAAAACGCAGCACAT 30614 || | |||||||||| |||| ||||| | | || || || || | ||||| Sbjct 4523 TTCGCGGCCCTGCCACAAGATCACTCGTCGG--GAATGTAGCCGTGGAACAACTCCACAT 4580 Query 30615 CGCCGCCGATCGCTGTGCAGTCGACCTCAAATAGCTCGATACGGTGACCGGGCTCGAGAC 30674 |||||||||| |||| ||| | ||| |||||||||| || ||| ||||| || | Sbjct 4581 CGCCGCCGATGCCTGTCGCGTCTAGCTCGAATAGCTCGACCTGGGCACCAGGCTCTAGGC 4640 Query 30675 TTTGAACGTCCGCGGA 30690 |||||||||| || || Sbjct 4641 TTTGAACGTCTGCAGA 4656 Score = 96.9 bits (106), Expect = 1e-15 Identities = 165/236 (70%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 40974 GCGATGACCGAGGCTGCCGACGCCGCAAGCCCCATCACGTTCACCGTTACCTTGGCCTTG 41033 ||||||| || || || ||||| | || | ||| || || || || ||| | Sbjct 14067 GCGATGATCGCCGCCGCGCTGGCCGCCACGCCGACCACCTTGACGGTCACGCCTGCCGCG 14126 Query 41034 TGCTCGCGCAGCAGGTTGTAGATCGCGACGCCTTCAAAGAAGTCGCCGCCGGGCGAATTG 41093 |||||||||||||||||||||||||| | ||| || || | ||||||||| || ||| Sbjct 14127 TGCTCGCGCAGCAGGTTGTAGATCGCCAGGCCCTCGAACACGTCGCCGCCAGGGCTGTTG 14186 Query 41094 ACGTTCACCGTGACTTCGCGCG-CGCCGATGTTGCGAAGCGCCGCGCTGATCCGCTTCGC 41152 | || |||||| | | || | |||||||| |||||| || ||||||| ||||| || Sbjct 14187 ATGTAGACCGTGGCGT-GCTTGTCGCCGATGGCGCGAAGGGCTCCGCTGATGCGCTTAGC 14245 Query 41153 GGTGACGCCGGTGCC---CTCCCAGTTGTCGCCGATGGAGTCGTAGATCGAAATCG 41205 || ||| || | ||||| |||||||| ||||||||| | |||| Sbjct 14246 CGTAGTGCCTTCACCTGTCCACCAGTCCTCGCCGATCTGGTCGTAGATGGTGATCG 14301 >seq2015 Length=8975 Score = 80.6 bits (88), Expect = 8e-11 Identities = 131/187 (70%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 27679 ACCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGATGCA 27738 |||||||||||||| || |||| || |||| |||||||||| || | | Sbjct 8097 ACCATCACATCGCAATATTGCGCAATGCTATACATGGCCCACTTGTCA--CAGCCAAAAC 8154 Query 27739 TCGACGGTCTTT--CCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCACG 27796 || | | | || || || || || |||||||||| || ||| |||||||||||||||| Sbjct 8155 TCCCCAGGCGTTTCCCTAGGCCATAACGCTCGTTCATCACCAGATCGTAGAAGATCCACG 8214 Query 27797 CGGGATTGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCCCGAGTACGTGCGCG 27856 | || || || |||| || ||||| |||| |||||| | || ||| ||||| | Sbjct 8215 CCGGGTTATTACTCCAGGCAATCTTGAAGCTGCCATCCCACATCCCACTGTAAGTGCGGG 8274 Query 27857 TCTCAGG 27863 | || || Sbjct 8275 TTTCCGG 8281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143409498429412