Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq476 98.7 2e-16 seq743 82.4 2e-11 >seq476 Length=182463 Score = 98.7 bits (108), Expect = 2e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 2339 GCATTCTGCCGGGCAATCTTCCGACCAATTTCCGCATCAAAGTTTTCCGGGCTTGCACAG 2398 ||||||| |||||| ||||| || || | || || | ||||| || ||||| || ||| Sbjct 141788 GCATTCTTCCGGGCGATCTTGCGGCCCAGCTCGGCGTTGAAGTTCTCGGGGCTGGCGCAG 141729 Query 2399 GCGCTCTCTCCGGTGACGGTGAAGCCGTTGCGCAGCACCAGAACGCAGAACGTCAGCAG 2457 || ||| ||||||||||| |||||||| ||||| ||| ||||||||||| ||||| Sbjct 141728 GCCGACTCGCCGGTGACGGTAAAGCCGTTACGCAGGCGCAGCACGCAGAACGTGAGCAG 141670 >seq743 Length=85660 Score = 82.4 bits (90), Expect = 2e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 27928 ACACGATATGCGCCGTACAGCCAGTACGTTGTTGCATGAGGCTGGTTATCCTTCAGACTG 27987 ||| || |||| || |||| ||| |||||| |||||||||| || || | ||||| Sbjct 13585 ACATGACTTGCGGCGCACAGGCAGCACGTTGCTGCATGAGGCCGGCTACAACACGGACTG 13526 Query 27988 GATTGAAAAGGCTCTGGCACATGAGCAGAAAGGTGTGCGCGCCGTATATAACAAAGCGGA 28047 |||||| ||| ||||| || |||||| ||| || | ||||| || ||||| || || Sbjct 13525 GATTGAGAAGTGCCTGGCGCACGAGCAGCGAGGCGTCAGGGCCGTCTACAACAAGGCCGA 13466 Query 28048 ATA-CGCCAGACAGCGCGCCTACATGTTGCAGCAGTGGTCCGATATGATTGA 28098 || ||| || ||||| | |||||||| | ||| | || ||||| || Sbjct 13465 GTACCGCGAG-CAGCGGACGGCGATGTTGCAAGACTGGGCGGACATGATCGA 13415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125004138195444