Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_007809.1 Length=59446 Score E Sequences producing significant alignments: (Bits) Value seq538 152 2e-32 >seq538 Length=154069 Score = 152 bits (168), Expect = 2e-32 Identities = 485/740 (66%), Gaps = 44/740 (6%) Strand=Plus/Plus Query 35587 TACCGCGAAGTGGACGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGATTGG 35646 |||||| | ||| |||||| | |||||||| | |||||||| |||| || Sbjct 117869 TACCGCAAGGTGCGCGCCCGCGACCTGTGGGATCAGGTCATGCGCTCCACCTACGACCAC 117928 Query 35647 GCGGAGCCGGGCGTGCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGC 35706 || || |||||| | |||||| ||||| || ||| |||||||| | |||||| Sbjct 117929 GCCGAACCGGGCATCCTGTTCCTCGACCGCATGAACAAGGACAACAACCTTTACTACTGC 117988 Query 35707 GAGACCATCGCCGCCACGAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGC 35766 |||||||||| ||||| |||||||||| ||||| || || ||| ||||||| |||| Sbjct 117989 GAGACCATCGAGGCCACCAACCCCTGCGCCGAGCAGCCCCTGCCGTCCTACGGCTGCTGC 118048 Query 35767 TTGTTGGGCTCCTTCAACCT---------GGTCAAGTACATCTTCAAGGACGGGGCGGGC 35817 | ||||||| ||||||| || ||| || |||| ||| ||| | Sbjct 118049 TGCCTGGGCTCGATCAACCTCACGCTGTACGTGAAGGACGCCTTCTCCGACAAGGC---C 118105 Query 35818 CGCTACGCCTTCGACTGGGACCAGTACCGCGAGGACATC----CCGCAGGTGGTCCGCGC 35873 ||| || ||||| | | | | || || |||| || | | ||||| Sbjct 118106 AGCTTCGACTTCGCCGG------CTTCGGCAAGACCATCGAAACCTC----GATCCGCAT 118155 Query 35874 GATGGACAACGTGGTGGATCGCGCGATCTATCCGCTGCCGCAGCAGAAGCAGGAAGCCAA 35933 | | ||||||||| | || | | || ||||| |||||| | |||||| | Sbjct 118156 GCTCGACAACGTGCTCGAAGCCACCCACTGGCCGCTCGAACAGCAGCACGCCGAAGCCCA 118215 Query 35934 GGACAAGCGCCGCATGGGCCTCGGGATCACCGGCCTGGCCAACGCCGCCGAAGCC---CT 35990 | |||||||||| | |||||||| |||||||||| | ||||| ||| | ||| || Sbjct 118216 GTCCAAGCGCCGCGTCGGCCTCGGCTTCACCGGCCTCGGCAACG-CGCTG--GCCATGCT 118272 Query 35991 GGGCCATGAG-TACGGTTCGCCCGCCTTCCTCGCCTT--CGAGGCGGAGGTGCTGGACAC 36047 | ||| || | |||| | || || ||| | | | ||| | | | | || Sbjct 118273 GCGCC-TGCGCTACGACACCGACGAAGCCCGCGCGATGGCCACCAGGATCT-CCGAATAC 118330 Query 36048 GCTGCGTGACGAGTCCTACCTGGCCAGCGCCCACATCGCCAAGGTCAAGGGCTCCTTCCC 36107 |||| ||| ||||||| |||||| || | | ||||||||| ||| ||||||| Sbjct 118331 -ATGCGCGACCAGTCCTATCTGGCCTCCGTCGAACTCGCCAAGGAACGCGGCGCCTTCCC 118389 Query 36108 GAAGTTCGACAAGGACAAGTACCT-TCAG--GGCCAGTTCATCAAGACCCTCCGCGAGGA 36164 | |||| || || ||||| || | ||| | ||| | | ||| | | || Sbjct 118390 GCTGTTCAACGCCGATCTCTACCTCTCCGGCGGCAACTTCGCCTCGCGCCTGCCGGCCGA 118449 Query 36165 CGTGCGGGACGCCATCGCCAAATACGGCATCCGCAACTCCCACCTCACTTCCATCGCCCC 36224 ||| |||| ||| ||| ||||| | |||||||| ||||| ||||||||||| Sbjct 118450 GGTGAAGGACAAGATCCGCAAGCACGGCCTGCGCAACTCGCACCTGCTCTCCATCGCCCC 118509 Query 36225 GACCGGGACCATCAGCCTG---TGCGCCGACAACGTCAGCTCCGGGATTGAGCCGGTGTT 36281 ||||| |||||||||||| | ||||||||||| | | ||| || |||||| ||| Sbjct 118510 CACCGGCACCATCAGCCTGGCCTTCGCCGACAACGCCTCCAACGGCATCGAGCCGCCGTT 118569 Query 36282 CGCCTACAGCTTCGACCGCA 36301 | | |||| || | ||||| Sbjct 118570 CTCATACACCTACACCCGCA 118589 Score = 127 bits (140), Expect = 8e-25 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 35179 GGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGTCCTCGCGGCGACCTGATCCGCAAG 35238 |||||||| ||||||| |||||| | || |||| || |||| || | ||| Sbjct 117497 GGCGGCGGCGTCGGCTACGACTTCTCCTCCATCCGCCCCAAGGGCGCGATGGTGCGCGGC 117556 Query 35239 CTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATGCACATCTTCGACGCGATC-TGCAA 35297 ||||||| || |||||||||| || || ||||| | | |||||| || || ||| | Sbjct 117557 ACCCAGTCCAACGCCTCCGGCCCGGTCTCCTACATGCGCGTGTTCGAC-CGCTCCTGCGA 117615 Query 35298 GTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCAGATGGGGGTGATGCGCGTGGACCA 35357 | ||||| ||| ||||| |||||||| ||||||||||| ||| ||||| ||||| Sbjct 117616 GACCGTCGAATCCGCCGGCTCCCGCCGCGGCGCCCAGATGGGCGTGCTGCGCTGCGACCA 117675 Query 35358 TCCCGACATTGAGGAGTTCATTCACGCCAAGCAACCCGG 35396 || ||||| ||||| ||||| ||||||||| | | ||| Sbjct 117676 CCCGGACATCGAGGAATTCATCCACGCCAAGGACCACGG 117714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190094861053472