Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq4721 394 4e-105 >seq4721 Length=367317 Score = 394 bits (436), Expect = 4e-105 Identities = 590/832 (71%), Gaps = 8/832 (1%) Strand=Plus/Plus Query 65403 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 65462 |||||||||| | | ||| ||| || ||| |||||||| || || | ||||||| Sbjct 2099 CCACCGGCTCCCTGGGTCTCGACATCG-TCTCGGCATCGGCGGCCTGCCCCGCGGCCGGG 2157 Query 65463 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTGG 65522 | |||||||||||||| || ||||| || || ||| | || || ||||| | || | Sbjct 2158 TCGTGGAAATCTACGGTCCCGAATCCTCCGGCAAGACGACCCTCACCCTCCAGGTCGTCG 2217 Query 65523 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 65582 || | ||||||| ||| |||| |||||||| ||||||||| || ||| | |||||| Sbjct 2218 CCGAGATGCAGAAGCTCGGCGGCACCGCCGCCTTCATCGACGCCGAACACGCGCTGGACG 2277 Query 65583 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 65642 |||||| || |||||| || || ||| | ||||| || | ||||| |||| Sbjct 2278 TCACCTACGCCCAGAAGCTCGGGGTCAACATCGGCGACCTCCTGATCTCCCAGCCCGACA 2337 Query 65643 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--T 65700 | |||||||||||||| ||||||| ||| | || || || || | || ||| | | Sbjct 2338 CCGGCGAGCAGGCCCTCGAGATCGCCGACATGCTGGTGCGCTCCGGTG-GC-GTCGACGT 2395 Query 65701 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 65760 ||||| | ||||| || || ||||| ||| ||||| |||||||||| || || Sbjct 2396 GGTCGTGATCGACTCCGTCGCCGCCCTCACCCCGAAGGCCGAAATCGAAGGCGAGATGGG 2455 Query 65761 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGG 65820 ||| | | ||||||||| || ||||| ||| |||||| ||||||||||||| | Sbjct 2456 CGACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGC 2515 Query 65821 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 65880 || |||| |||||||||| ||| ||| |||||||| | || ||||||||| Sbjct 2516 CAACATCAAGCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGG 2575 Query 65881 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 65940 | || | | |||| |||||||||||| |||||||| || | | ||||||||| Sbjct 2576 CGTGATGTTCGGCAGCCC---CGAGACCACCACCGGCGGCAACGCCCTCAAGTTCTACGC 2632 Query 65941 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66000 || || || ||||| |||| ||||||| |||| ||| | ||| |||| |||| Sbjct 2633 GTCGGTGCGGATGGACATCCGCCGCATCGGCACCATCAAGAAGAACGACGAGGTGATCGG 2692 Query 66001 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 66060 | | ||| ||| |||||||||||||||||| | || |||||| |||| | || Sbjct 2693 CTCCGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCACCGCCGTTCCGCGAAACCCT 2752 Query 66061 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 66120 |||| | || ||||||| || |||| ||| || |||| ||| || ||||||||| ||| Sbjct 2753 GTTCGACATCCTGTACGGCGAAGGCACCTCCCGCGAGGGCGAGATCATCGACCTGGGCGT 2812 Query 66121 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGC 66180 | ||| | || | ||||| |||||||||| | ||||| | | |||| ||| Sbjct 2813 GCAGCACAAGTTCGTCGACAAGTCCGGCGCCTGGTACGCCTACGGCGGCGAGAAGATCGG 2872 Query 66181 TCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATCACC 66232 ||||||||| ||| ||| | | | ||||||||||||||| ||||| || Sbjct 2873 CCAGGGCAAGGACAACGCCCGCGAATTCCTCAAGGCCAACCCGCACATCGCC 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238206988925788