Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4280 464 8e-126 seq98 167 3e-36 seq4600 134 2e-26 seq4284 107 2e-18 >seq4280 Length=912600 Score = 464 bits (514), Expect = 8e-126 Identities = 881/1287 (68%), Gaps = 21/1287 (2%) Strand=Plus/Minus Query 62431 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62490 ||| || ||||| | || ||||| || || | |||||| || || ||||| ||||| || Sbjct 357167 ATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATA 357108 Query 62491 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATA 62550 || || ||||||||||| | || ||| || | ||| ||||| ||| || | ||||| Sbjct 357107 GTAGATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGGATA 357048 Query 62551 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62610 | | | ||| || || || || | ||| || ||||| || ||||| || | || | Sbjct 357047 ACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCG 356988 Query 62611 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62670 | |||| || | || ||||| | ||||| ||||||| || || ||||| ||||| Sbjct 356987 CATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAG 356928 Query 62671 ATTTCT---GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62727 ||| | | ||||| |||| | || || |||||||| | |||||| || | || Sbjct 356927 ATTCTTAGTGGCAATT--TTTG-CTACTTCTTTCAGTTTTTGGAAATCATATGTCTTGTC 356871 Query 62728 ---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TA 62782 | | || |||||||||||||| | || || || |||||||| || | |||| | Sbjct 356870 GGGTTTCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCTT 356811 Query 62783 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 62842 | | | |||| | || || |||||||| || |||||||||||||| | || Sbjct 356810 GGAGGAG--TATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTTC 356753 Query 62843 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 62902 || |||||||| || |||| || ||||||||||| || ||| | ||| ||| ||||| Sbjct 356752 TGCTGATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTCC 356693 Query 62903 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC-T 62961 | || || || || || || ||| | || | || || | | | |||||| | Sbjct 356692 ACTTGGGACTCGATGATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAATGTATCGT 356633 Query 62962 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAG 63021 | || | ||| ||||| ||| |||| | ||| ||||| || ||||| | | || Sbjct 356632 CCTTCCGCTT-CGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATGTGTCGGATAG 356574 Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63081 ||||||||||||| || |||||||| |||| ||| ||| | ||| |||||| ||||| Sbjct 356573 CCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCTTCAT 356514 Query 63082 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT---ATGTTCCTCGTT 63138 || | ||| ||||||||||| || || | || |||| || || ||| || Sbjct 356513 GAACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAGCG-- 356456 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || || ||||| || | ||| |||||| | | || ||| |||||||||||| | || Sbjct 356455 -CCGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGAGATA 356397 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | | || ||||| ||||| ||||||||||| | ||| | || |||||||| Sbjct 356396 AATGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGTTATT 356337 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 || || |||||||| ||||| | ||| ||||| | || || || || | || ||| | Sbjct 356336 GTACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGTAGGT 356277 Query 63319 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 ||| | || | || | || || || ||||| || ||| ||| || || || Sbjct 356276 TCCCTTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAATCAA 356217 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || || | || || || || ||||| ||||| || || || || ||||| | | || Sbjct 356216 CGCACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCAACAG 356157 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 || ||| |||| || | || | || |||| ||| | || || ||||| || Sbjct 356156 GAAGCAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAGCATG 356097 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63558 ||| || || | || || || | ||||||||||||||| || | ||| ||||| Sbjct 356096 AGTGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTTCGCC 356037 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 || ||||| | || || ||||| ||||||||||| || | ||| ||||||||| || Sbjct 356036 GTGGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGCCTTT 355977 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 || || | ||| || ||| ||||| || || || || |||||||| || |||||| Sbjct 355976 GATCTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAAAGTC 355917 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAG 63705 || |||||||| ||| |||| || || Sbjct 355916 CCGATCGTAAATGATAGCCGAATTCAG 355890 >seq98 Length=5729030 Score = 167 bits (184), Expect = 3e-36 Identities = 573/885 (65%), Gaps = 9/885 (1%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 |||||| ||| || || || || || || || || || || |||||||||||||| Sbjct 2603155 CATAACACCCCACTTCTGATACTCTCCTACTTTCTTCTCAAAGAAGTTAGTTTTACCTTC 2603214 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | || || ||||| ||| || ||||| | ||| ||||| || | | | Sbjct 2603215 AAGCGAAATGAACTCCATAAAACTAAAGGGATTCTTCGTATTGTAAATCTTATCGATGAC 2603274 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 ||| || | || || ||| || || ||||| ||||| || | |||||||| Sbjct 2603275 CAACTCGAGCAGCAGTCCATCAGCCACGAATTCAATATACTGCGACAAAAGGTCACAATT 2603334 Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 ||| || | || | ||| ||||| | || || ||||| |||| || ||| | Sbjct 2603335 CATGCCAAGCAGGTCAACCGGAAGGGTTTTCGTCAGGAATTCCTGTTTGATCAGGACTGT 2603394 Query 32597 GTCTGTTATAA--TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654 || |||| | |||| | |||| ||| ||| | | | || ||| ||| Sbjct 2603395 TTCGCGGATAAACTCGATCACA-TGTT-CTTGTGATGGTTTCTGTACCAGATATTTGAAC 2603452 Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 || | | | | || || ||| || || ||||| | || ||||||| ||| || Sbjct 2603453 ATAAGAGAAACAAATTCCATGTGCAGGCCTTCGTCACGTGAGATCAATTCGTAGGAGAAT 2603512 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 || || || ||| | || |||||||| || | |||| ||||| || || |||| Sbjct 2603513 GTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATGGATGCGAAACTTCCACTG 2603572 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT-- 32832 ||||||||| |||| || | || ||||| | | | ||||| | ||| | | Sbjct 2603573 AAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTG 2603632 Query 32833 CATGTAT-CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | || || ||| || | | | || || ||||| || ||||| |||| | || || Sbjct 2603633 CTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATG 2603692 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 ||||| || | || | ||| || ||| || ||| ||||| || | || Sbjct 2603693 GCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATAAGCAGCGAG 2603752 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 |||||||| || | |||||| || |||||||||||||| |||||||| | |||||| Sbjct 2603753 TACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCATAGAAGCAACGTGCCTCG 2603812 Query 33012 GTAATCTGTA-CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 || | ||| | || ||| ||| ||||| | | || || |||| | || || Sbjct 2603813 GTGACCTGGAGCTCCTGGCTGAAA-CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGA 2603871 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130 || |||| || |||||||||||| || || | || ||| ||| | || || | Sbjct 2603872 AGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTC 2603931 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 |||||| | ||||||||| | ||| ||||| || | |||||| | ||||||||||| Sbjct 2603932 CCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGC 2603991 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || || ||||| | ||| ||| ||||||| || || || ||||| Sbjct 2603992 CTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAAAT 2604036 >seq4600 Length=436310 Score = 134 bits (148), Expect = 2e-26 Identities = 260/381 (68%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 32856 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 32915 || || ||||| || ||||| |||| | || || ||||| || | || | ||| Sbjct 110435 TCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGT 110494 Query 32916 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 32975 || ||| || ||| ||||| || | || |||||||| || | |||||| Sbjct 110495 TTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCC 110554 Query 32976 ATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA-CTTCTGTACAAAA 33034 || || ||||||||||| |||||||| | |||||||| | ||| | || ||| ||| Sbjct 110555 ATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAA 110614 Query 33035 TCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33094 ||||| | | || || |||| | || || || |||| || ||||||||||| Sbjct 110615 -CGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATG 110673 Query 33095 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 33154 | || || | || ||| ||| | || || | |||||| | ||||||||| | Sbjct 110674 TGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAG 110733 Query 33155 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 33214 ||| ||||| || | |||||| | ||||||||||||| || ||||| | ||| ||| | Sbjct 110734 ATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCC 110793 Query 33215 ATGATATTGAATTGGAAAAAT 33235 |||||| || || || ||||| Sbjct 110794 ATGATACTGGATGGGGAAAAT 110814 >seq4284 Length=891408 Score = 107 bits (118), Expect = 2e-18 Identities = 181/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || |||||||| | || |||||||| || | ||||| || || ||||||||| Sbjct 84830 TAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGAAAT 84771 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 ||||||||||| | || ||||| | ||| || || | || ||||| | | || Sbjct 84770 CCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTC 84711 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 || ||||| || || || || ||||| || |||| |||||| || || | || Sbjct 84710 TCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTC 84651 Query 33111 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 33170 ||| | | | || || | |||||| | ||||||||| | ||| ||||| || ||| Sbjct 84650 TCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACT 84591 Query 33171 GTCCAAAATGATGCCTCTGCCT 33192 ||||| || ||||||||||||| Sbjct 84590 GTCCAGAAAGATGCCTCTGCCT 84569 Score = 98.7 bits (108), Expect = 1e-15 Identities = 213/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 || |||||| || || ||||| ||||| ||| | ||||||||||| || | || Sbjct 85540 CAGTCTATCAGCCACGAATTCAATATACTGCGACATAAGGTCACAATTCATGCCAAGCAG 85481 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | ||| ||||| || || || || || ||||| || ||| || || ||||| Sbjct 85480 GTCAACCGGAAGGGCTTTCGTCAGGAACTCCTGTTCGATCAGGACTGCTTCGCGGATAAT 85421 Query 32609 A--GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 |||| || ||||| ||| | | | || ||| ||||| | ||| || Sbjct 85420 CTCGATCACACG--TTCTTGTGATGGTTTCTGTACCAGATATTTGAACATAAGACAAGCA 85363 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 || || ||| || || ||||| | || ||||||||||| || || || || ||| Sbjct 85362 AAGTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGGC 85303 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 || || |||||||| || | |||||| ||||| || || |||| ||||||||| ||| Sbjct 85302 ATCAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACCT 85243 Query 32787 TCTACTGCCGCAAAGGC 32803 || || || || ||||| Sbjct 85242 TCCACGGCGGCGAAGGC 85226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633594322657200