Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq251 109 5e-19 >seq251 Length=2698768 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||||||||| ||||||| | ||||| ||| | || Sbjct 664543 ATGCAGATCTTCGTCAAGACTCTGACCGGTAAGACCATCACCCTGGAAGTTGAGCCATCC 664602 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| | ||| || ||| || || ||||| || || || || || Sbjct 664603 GACACTATCGAGAATGTAAAGGCTAAGATCCAAGATAAGGAAGGAATCCCTCCAGATCAG 664662 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | ||||||| || || | ||| ||||| Sbjct 664663 CAGCGATTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGTACCCTTTCCGACTACAAC 664722 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| |||||| ||| || ||||| || || | | ||||| ||| Sbjct 664723 ATTCAGAAAGAAAGCACACTGCATTTGGTCCTGCGATTGAGAGGCGGA 664770 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| ||||| |||||||| | ||||| ||| | || Sbjct 663859 ATGCAGATCTTCGTCAAGACTCTGACTGGTAAGACCATCACACTTGAAGTCGAGCCATCC 663918 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||||||| | ||| || ||| || || ||||| || || || || || Sbjct 663919 GACACTATCGAGAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCAG 663978 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | ||||||| ||| ||| | ||| |||||| Sbjct 663979 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGATGGTCGTACTCTTTCCGACTACAAT 664038 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| || ||| | || || Sbjct 664039 ATCCAGAAGGAGAGCACTCTTCATCTGGTTCT 664070 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG-TGGAGTCGTC 25057 ||||| || || || |||||| ||||||||||| ||||||| | || | || || ||| Sbjct 659543 ATGCAGATCTTCGTGAAGACTCTGACCGGTAAAACCATCACCTTGGATGTTGAAGCCGT- 659601 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||| || | ||| || ||| || || ||||| || || || || || Sbjct 659602 AGACACCATCCAGAACATCAAGGGCAAGATCGAGGATAAGGAAGGTATCCCTCCAGATCA 659661 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || |||||||| | ||||||| || | || ||||||||| Sbjct 659662 ACAGCGCCTGATCTTCGCTGGCAAACAGCTGGAAGATGGCCGTGCCCTGTCCGATTACAA 659721 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || | ||| |||||||| || ||||| Sbjct 659722 CGTCCAGAAGGGATCTACGCTACACTTGGTGCT 659754 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| | || || ||| | || Sbjct 661807 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCC 661866 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| || ||| || || ||||| || || || || || Sbjct 661867 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAG 661926 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| || ||| | ||| ||||| Sbjct 661927 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCCGACTACAAC 661986 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 || || || || ||| |||||| Sbjct 661987 ATCCAGAAGGAGAGCACTCTACAT 662010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| | || || ||| | || Sbjct 662263 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCC 662322 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| || ||| || || ||||| || || || || || Sbjct 662323 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAG 662382 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| || ||| | ||| ||||| Sbjct 662383 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCCGACTACAAC 662442 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 || || || || ||| |||||| Sbjct 662443 ATCCAGAAGGAGAGCACTCTACAT 662466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433302877402955