Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq4367 87.8 2e-12 seq4287 86.0 7e-12 >seq4367 Length=838166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 219/329 (67%), Gaps = 9/329 (3%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 || || || ||| | ||||||||||| |||| | ||||| ||||| ||||| || Sbjct 422158 CATGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGATGCACCTCGGCTGGACCG 422217 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| || ||| | ||| ||||| | ||| | || || | |||| || Sbjct 422218 CACTTCAACCCGCACGGCAAGGAGCACGGTGGCCCCGATGCCGCCGAAAGACACGCCGGA 422277 Query 127664 GACCTGGGCAACGTGGAGGCGGCTAGCAGC-AATTCTTTGACCGAAGTCAACATCATCGA 127722 ||| |||||||||| | || | | ||||| | || || | ||| | ||| ||| Sbjct 422278 GACTTGGGCAACGTTGTCGCCGATGGCAGCGGAGTC----GCCAAGGTCGATATCTCCGA 422333 Query 127723 CCACGTC--ATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTGGTCGTGCAC 127780 | ||| || || ||| ||||||| ||| || | || | | | ||||||| || Sbjct 422334 C--AGTCAGATTTCCTTGTCCGGACCGCTGAGCATCCTGGGACGCACTGTGGTCGTTCAT 422391 Query 127781 ACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACCGGCAACTCG 127840 | |||| ||| ||| | |||||| | || | |||||||| | ||||| ||| | Sbjct 422392 GCCGATCCTGATGATTTGGGCCTGGGTGGACACGAATTGAGCAAGTCTACCGGAAACGCC 422451 Query 127841 GGCGGTCGGTTGGGGTGCGGGATCATTGG 127869 || | ||| ||| ||||| ||||||| Sbjct 422452 GGTGCTCGTCTGGCTTGCGGTGTCATTGG 422480 >seq4287 Length=5058281 Score = 86.0 bits (94), Expect = 7e-12 Identities = 216/327 (66%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 127544 CACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGAA 127603 || || || ||| | ||||||||||| |||| | ||||| ||||| ||||| || Sbjct 1363576 CATGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGATGCACCTCGGCTGGACCG 1363635 Query 127604 CACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGGC 127663 |||||||| || ||| | ||| ||||| | ||| | || || | |||| || Sbjct 1363636 CACTTCAACCCGCACGGCAAGGAGCACGGTGGCCCCGATGCCGCCGAAAGACACGCCGGA 1363695 Query 127664 GACCTGGGCAACGTGGAGGCGGCTAGCAGC-AATTCTTTGACCGAAGTCAACATCATCGA 127722 ||| |||||||||| | || | | ||||| | || || | ||| | ||| ||| Sbjct 1363696 GACTTGGGCAACGTTGTCGCCGATGGCAGCGGAGTC----GCCAAGGTCGATATCTCCGA 1363751 Query 127723 CCACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTGGTCGTGCACAC 127782 | | || || ||| ||||||| ||| || | || | | | ||||||| || | Sbjct 1363752 CAGCCAGATTTCCTTGTCCGGACCGCTGAGCATCCTGGGACGCACTGTGGTCGTTCATGC 1363811 Query 127783 GGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACCGGCAACTCGGG 127842 |||| ||| ||| | |||||| | || | |||||||| | ||||| ||| | || Sbjct 1363812 CGATCCTGATGATTTGGGCCTGGGTGGACACGAATTGAGCAAGTCTACCGGGAACGCCGG 1363871 Query 127843 CGGTCGGTTGGGGTGCGGGATCATTGG 127869 | ||| | | ||||| ||||||| Sbjct 1363872 TGCTCGTCTTGCTTGCGGTGTCATTGG 1363898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537571232769720