Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq986 131 1e-25 seq251 120 3e-22 >seq986 Length=4314454 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| | ||| | ||||||||||| || |||||||| || Sbjct 1408261 ATACCACCACGCAGACGCAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCT 1408202 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || || ||||||||| |||| ||||| ||||| || ||| Sbjct 1408201 GACAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGTTGATCTGGA 1408142 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| || || || | | ||| | |||||||| | ||| Sbjct 1408141 GGGATACCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCG 1408082 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| ||||| || || |||||||||||||| Sbjct 1408081 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 1408032 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| | ||| | |||||||| || || |||||||| || Sbjct 1408489 ATACCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCA 1408430 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || |||||||||||| |||| ||||| ||||| || ||| Sbjct 1408429 GACAGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGA 1408370 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| ||| | | || | |||||| | | ||| Sbjct 1408369 GGGATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCG 1408310 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || ||||| || |||||||||||||| Sbjct 1408309 ACCTCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCAT 1408260 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| | ||| | |||||||| || || |||||||| || Sbjct 1408945 ATACCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCA 1408886 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || |||||||||||| |||| ||||| ||||| || ||| Sbjct 1408885 GACAGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGA 1408826 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| ||| | | || | |||||| | | ||| Sbjct 1408825 GGGATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCG 1408766 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || ||||| || |||||||||||||| Sbjct 1408765 ACCTCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCAT 1408716 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || |||||||||||||||||| | ||||||| |||||| || |||||||| Sbjct 1409140 GTAGACTCCTTTTGAATGTTGTAATCGGATAGAGTACGACCATCTTCTAGCTGTTTACCG 1409081 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || ||||||||||| || |||||||| ||||| ||||| ||||| || Sbjct 1409080 GCGAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 1409021 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | ||||| |||| || | || ||||| |||| || Sbjct 1409020 ACGTTCTCGATGGTGTCCGAAGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTC 1408961 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1408960 TTCACGAAGATCTGCAT 1408944 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | ||||||||||| || |||||||||||| Sbjct 1408033 ATACCACCACGCAGACGAAGGACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCG 1407974 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||||| ||| || || || ||||| || |||| |||||||| || || || Sbjct 1407973 GACAAAGTACGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCTGGT 1407914 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| || | | || | |||||| | | ||| Sbjct 1407913 GGGATGCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGGTGTCCGAAGGCTCG 1407854 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| || || || || |||||||| Sbjct 1407853 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1407804 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || | ||| | |||||||| || || |||||||| || Sbjct 1407577 ATACCACCACGCAGACGCAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCT 1407518 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||||| ||| || || || ||||| || |||| ||||||||||| || ||| Sbjct 1407517 GACAGAGTACGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGACGCTGTTGATCTGGA 1407458 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||| || | | ||| | ||||| | | ||| Sbjct 1407457 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTTTCGATTGTGTCCGAAGGCTCG 1407398 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| || || || || |||||||| Sbjct 1407397 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1407348 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| | ||| | ||||||||||| || |||||||| || Sbjct 1408717 ATACCACCACGCAGACGCAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCT 1408658 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||||| ||| || || || ||||| || |||| |||||||| || || || Sbjct 1408657 GACAGAGTACGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCTGGT 1408598 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||| || | | || | |||||| | | ||| Sbjct 1408597 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCCGAAGGCTCG 1408538 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| || || || || |||||||| Sbjct 1408537 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1408488 >seq251 Length=2698768 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || || || |||| ||||||| | || || | |||||||||| Sbjct 659772 ATGCCACCTCGGAGGCGCAGCACCAAGTGTAGCGTAGATCCCTTCTGGACGTTGTAATCG 659713 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| |||||| || ||||| |||||| |||| || |||||||| || ||| Sbjct 659712 GACAGGGCACGGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGGCGCTGTTGATCTGGA 659653 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA--ACGGTGTCGGTGGATT 114330 || || ||||| || || | ||||| || | ||||| | |||||| || || Sbjct 659652 GGGATACCTTCCTTATCCTCGATCTTGCCCTTGA--TGTTCTGGATGGTGTCTACGGCTT 659595 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || |||| ||| | ||||| ||||||||||| || || || |||||||| Sbjct 659594 CAACATCCAAGGTGATGGTTTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 659543 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| | ||| | ||| || || || ||||||||||| Sbjct 661808 ATACCTCCACGGAGACGCAGAACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAATCC 661749 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||| || || || ||||| ||| |||| | |||||| || ||||| Sbjct 661748 GACAGGGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGG 661689 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | || | ||||| | || |||| Sbjct 661688 GGGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAGGGTTCG 661629 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||| || ||||| || ||||||||||| Sbjct 661628 ACCTCCAAGGTGATGGTCTTACCGGTTAGGGTTTTGACGAAAATCTGCAT 661579 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| | ||| | ||| || || || ||||||||||| Sbjct 662264 ATACCTCCACGGAGACGCAGAACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAATCC 662205 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| || || ||||| ||| |||| | |||||| || || || Sbjct 662204 GACAGGGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGC 662145 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| || | | ||||| || |||| | || Sbjct 662144 GGGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCA 662085 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||||||| || || || |||||||| Sbjct 662084 ACCTCCAAGGTGATGGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCAT 662035 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114191 TTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTA 114250 |||||| ||||||||||| ||| | ||||| |||||| || || ||||| ||| | Sbjct 664734 TTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAGCTGCTTACCGGCGAA 664675 Query 114251 GATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG 114310 ||| | ||||| || || ||||| || ||||| || || ||||| |||| | Sbjct 664674 GATCAATCGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGGATCTTAGCCTTTACATT 664615 Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || | ||||||| | || || |||| ||| | || || ||||||||||| || || Sbjct 664614 CTCGATAGTGTCGGATGGCTCAACTTCCAGGGTGATGGTCTTACCGGTCAGAGTCTTGAC 664555 Query 114371 AAAAATCTGCAT 114382 || |||||||| Sbjct 664554 GAAGATCTGCAT 664543 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| | ||| | || || || || |||||||| ||| Sbjct 664316 ATACCTCCACGGAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 664257 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| || || ||||| ||| |||| | |||||| || || || Sbjct 664256 GAAAGGGTACGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGG 664197 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| || | | ||||| || |||| | || Sbjct 664196 GGGATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGATGGCTCA 664137 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||||||||| || || || |||||||| Sbjct 664136 ACCTCCAGGGTGATGGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 664087 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| | ||| | || ||| || || |||||||| ||| Sbjct 663176 ATACCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCG 663117 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| || || ||||| || |||| | |||||| ||||| || Sbjct 663116 GAAAGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGGTCTGGG 663057 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | ||||| || |||| | ||| Sbjct 663056 GGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGATGGCTCG 662997 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || ||||| || || || || |||||||| Sbjct 662996 ACTTCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 662947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420110042314284