Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq1398 163 9e-36 >seq1398 Length=15916 Score = 163 bits (180), Expect = 9e-36 Identities = 804/1245 (65%), Gaps = 45/1245 (4%) Strand=Plus/Minus Query 17268 GGGCCCATCGTGGGGCTGGTGAATGGCCTGCAGTCGGTCTATCTCGACGGCACGCCGATC 17327 ||||| |||| ||| ||||| || || ||| |||||||||| |||||| ||||| | Sbjct 2509 GGGCCTATCGAGGGACTGGTTAACGGGCTGGAGTCGGTCTACCTCGACCAGACGCCCCTG 2450 Query 17328 CAGAACGCGGACGGCTCGCTGAATTTCCAGAAC-TACACCGTCGACGCGCGAACCGGCAC 17386 | || | ||||| ||| || ||||| | | || ||||| || ||| || Sbjct 2449 CGCAATCCTGACGGGTCGTACAACTTCCAAGGCGTGCAGT-TCGACATACGCCACGGGAC 2391 Query 17387 GCAGGATCAGGACTACATCTCGGGTTTTCCGGCCGTC-GAGCGTGAGGCCGGC-GTCGGC 17444 ||| | ||||||| |||| | || || || | ||| ||| | | | | | | || || Sbjct 2390 ACAGCAGCAGGACTTCATCCCTGGCTTCCCCTC-GTCTGAGAGCGCG-CAGTCTGTGGGT 2333 Query 17445 GTGCCGCTGACGTCCGACGCGCCGTGGGTGCGCCAAATCCAGAATACGCAACTGACTGCG 17504 ||| ||| | || | | |||||||| ||| || | || | ||| | || Sbjct 2332 GTGGAGCTTGTCTACGGCACACCGTGGGTTCGCACGTTCACGCGCTCGGAGCTGTCCGCC 2273 Query 17505 GTGCGCGTGCGCTTCGGTGTGC-CGGCGCTACAGCGTCAGGACACGTCGAACGGCAATAT 17563 | || | | |||||||| |||| || || ||| || | || ||||| | || Sbjct 2272 ATCCGTATCACCCTCGGTGTGAACGGC-CTGCAAAAGCAGAACCCATCTAACGGTGACAT 2214 Query 17564 CACGGGCTA-TCGCGTCGACTATGCGATCGACTTGTCGGTCGACGGCGGGTCGTATGCGC 17622 | ||||| ||| || | || || ||||||||| | |||||||| || ||| || Sbjct 2213 CGGCGGCTACTCG-GTAGCATACGCTATCGACTTGCAGACTGACGGCGG--CGCATGGGC 2157 Query 17623 AG--GTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCTCTATGAGCGCTCGCATCG 17680 | |||||| | ||| ||| |||||||| ||| || || ||| |||| || Sbjct 2156 CGAAGTGCTGAGCACTGCATTCACTGGCAAGACCACGCAGCAATACCGCCGCACGCACCG 2097 Query 17681 GATCGAGCTGCCGC-GCGCAAAAAATGGTTGGTTGATCCGCGTGCGCCGCATCACGCCGA 17739 || || |||||| | || || || || | | ||||| ||||| | ||||| Sbjct 2096 CATTGACTTGCCGCAGGGCGCGGCATCGTGGGCCG-TGCGCGTTCGCCGTCTGACGCCCC 2038 Query 17740 ACGCGCACACGGCGACGATCGCCGACGCGATCAACATCGAGGCGATTACCGAGATCATCG 17799 | ||| ||| |||||| ||| | | |||||| | | ||||| |||||| Sbjct 2037 AAGCGGGGGTGGCCACGATCCAAGACACCACTGTCATCGACACCGTGACCGAAGTCATCG 1978 Query 17800 ATCGGAAGCTCCGCTATCCGATGACGGCGCTTGTCGGTATGACGTTCGACGCACGTTCG- 17858 | | ||||| ||||| || ||| |||| | ||| || | | ||||| ||| Sbjct 1977 ACGGCAAGCTGCGCTACCCCATGTCGGCTGTCTGCGGAGTGCAGGTAGACGCC---TCGC 1921 Query 17859 --TTCTCGAGCGTGCCAGTGCGTTCGTATCACGTGCGAGGGATGATCT-TCCGAGTCCCG 17915 ||| |||| | ||| ||| | |||||| || |||| || |||| ||||| Sbjct 1920 AATTCCAGAGCATCCCAACGCGGGCCTATCACCTGA-AGGGCCGACAGATCCGCGTCCCC 1862 Query 17916 ACAAACTACGACCCGGAGACGCGTACGTACTCGGGTACATGGGACGGTACGTTCAAGGCA 17975 |||||| |||||| ||| | || |||| || |||||||| || |||||| | Sbjct 1861 GTGAACTACAGCCCGGACACGGGCGTCTATGCGGGCACCTGGGACGGCACATTCAAGACG 1802 Query 17976 GCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTACTTCTCGA-CAAGCTCAACGG 18034 |||| |||| || || |||||||||| |||| | | | || ||| | | | | |||| Sbjct 1801 GCATATTCGAATAACCCCGCGTGGGTCTTTTACGACAT-CGTCACGAACGACCGCTACGG 1743 Query 18035 ATT-GGGT----GACCGTGTCGATGCTTCGATGGTCGATAAGTGGGCGCTGTACGCAATC 18089 | |||| || | | || ||| |||| | |||||||||||||| | ||| Sbjct 1742 CCTCGGGTCGAAGATCCCGGCGG-GCTG----GGTCAACAAGTGGGCGCTGTATGAGATC 1688 Query 18090 GCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGG---GCGGCAAGGAGCCGCGCTTC 18146 | || ||||| |||||||| ||| || |||| || ||| || |||| |||||| Sbjct 1687 GGTCGGTACTGTGACGAACTGGTGCCCACCGGGCGGGGCAGCGCCACTGAGCGCCGCTTC 1628 Query 18147 ACCTGCAACTGCGT-GCTTCAGACGCGCGCGGACGCATTCAAGGTGGTACAGGATCTCGC 18205 || |||||| |||| |||| | |||||||| || | || || | ||| | || Sbjct 1627 ACGTGCAAC-GCGTATATTCAATCCCGCGCGGAGGCTTATAACGTCCTGACGGACTTGGC 1569 Query 18206 GAGCGTCTTTCGCGGCATTTCGTACTGGGGCGCCGGGTCGGTGGTCGCGTCGGCCGATAT 18265 | ||||||| || || || |||||| |||||||| | || | || || Sbjct 1568 GGGCGTCTTCCGGGGGATGGTCTACTGGTCTGCCGGGTCAGCCGTACCAGTAGCTGACCG 1509 Query 18266 GCCGTCCGATCCGGTCTACCTGTACACGGCCGCGAATGTCGTCGGTGGTTCATTCAAGTA 18325 || |||||| || ||| ||||||| |||| || | | ||| |||| ||| Sbjct 1508 CCCCCGCGATCCTGTGTACACGTACACGCAGTCGAACGTGATTGATGGGCGCTTCACGTA 1449 Query 18326 CGTCGGCAGCGAACGCAAGACGCGTTACACGGTCGCGCTCGTCAGCTACAACGATCCGAC 18385 | |||||| ||||| || || || ||||| |||||||||| || ||| Sbjct 1448 CTCAGGCAGCCGTCGCAAAGATCGCCCGACTGTGGCGCTGGTCAGCTACACGGACATGAC 1389 Query 18386 GAAC-CAGTACAAGC-AAGCTGTCGAGCCCGTGCAGGACGACGACGGGATCGCGCGATAT 18443 | || | | | ||| |||| | | ||| |||||| | | | ||||||| || Sbjct 1388 GGACTTTGGCCGCTCGAAG--GTCGTGTACTGGCAAGACGACCAGGCGGTCGCGCGGTAC 1331 Query 18444 GGCGTCATCAAGACGGAGGTCACGGCGTTCGGCTGCACGTCGCAG 18488 ||||| |||||||||| || |||||||| ||||||||| || Sbjct 1330 GGCGTGCGCAAGACGGAGACGACAGCGTTCGGTTGCACGTCGGAG 1286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155626408264824