Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1673 104 2e-17 seq251 93.3 3e-14 >seq1673 Length=11743 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 8037 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 8096 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 8097 ATAACTGATATAATGAGCCTTTTGCGGTTTC 8127 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 8037 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 8096 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 8097 ATAACTGATATAATGAGCCTTTTGCGGTTTC 8127 >seq251 Length=2698768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| ||| || || ||||||||||| ||||| |||||||| |||||||| || | Sbjct 663630 ACCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTC-GG 663572 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| ||||| |||||||| |||| ||||||||||| Sbjct 663571 AAAGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGATC 663517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || ||||| ||||||||||| || ||||||||||| ||||||||||| | Sbjct 661806 ACCTCCACGGAGACGCAGAACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAATCCGA 661747 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || | || |||| ||||| ||||| || |||| |||||||||||| Sbjct 661746 CAGGGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCC 661692 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || ||||| ||||||||||| || ||||||||||| ||||||||||| | Sbjct 662262 ACCTCCACGGAGACGCAGAACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAATCCGA 662203 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| ||||| ||||| || |||| ||||||||||| Sbjct 662202 CAGGGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATC 662149 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| ||| || || ||||||||||| ||||| |||||||| |||||||| || | Sbjct 663174 ACCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTC-GG 663116 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| ||||| |||||||| |||| |||||||| || Sbjct 663115 AAAGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGGTC 663061 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || ||||| ||||||||||| ||||| |||||||| || ||||| || | Sbjct 663858 ACCTCCACGAAGACGCAGAACCAGATGAAGAGTGCTTTCCTTCTGGATATTGTAGTCCGA 663799 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || | || || | || |||| |||||| ||||| || |||| ||||||||||| Sbjct 663798 CAGAGTGCGGC-CATCTTCCAGTTGCTTACCGGCGAAGATCAAACGCTGCTGATC 663745 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || ||||| ||||||||||| |||||||||||||| |||||||| || | Sbjct 664314 ACCTCCACGGAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GG 664256 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| ||||| ||||| || |||| ||||||||||| Sbjct 664255 AAAGGGTACGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATC 664201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || |||| || ||||| || |||||||||||||| |||||||| || | Sbjct 662034 ACCTCCGCGGAGACGCAAAACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GG 661976 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| |||||||||||||| |||| ||||||||||| Sbjct 661975 AAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATC 661921 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || |||| || ||||| || |||||||||||||| |||||||| || | Sbjct 662490 ACCTCCGCGGAGACGCAAAACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GG 662432 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| |||||||||||||| |||| ||||||||||| Sbjct 662431 AAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATC 662377 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || ||||| ||||||||||| |||||||||||||| || ||||| || | Sbjct 662946 ACCTCCACGGAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATATTGTAGTC-GG 662888 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| ||||| ||||| || |||| ||||||||||| Sbjct 662887 AAAGAGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATC 662833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || ||||| ||||||||||| |||||||||||||| || ||||| || | Sbjct 664086 ACCTCCACGAAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATATTGTAGTC-GG 664028 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| ||||| ||||| || |||| ||||||||||| Sbjct 664027 AAAGAGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATC 663973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039379935114