Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_009543.1 Length=44520 Score E Sequences producing significant alignments: (Bits) Value seq1398 91.5 4e-14 >seq1398 Length=15916 Score = 91.5 bits (100), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 5323 CTGCGTCTTGCTATGTTGCAGGCCAGCCTGGCTGAGTACAACCCTAGCGGCATTGTGATC 5382 ||||| || || ||| |||| | ||| | |||||| || | |||||| || ||| Sbjct 12803 CTGCGCCTGGCCATGCTGCAAGTGTCGCTGTCCGAGTACGACACCGACGGCATCGTCATC 12744 Query 5383 AACCCGATTGACTGGGCGGCGATTGAGCTGGCTAAGGATGCCAACAACCAGTACCTGATT 5442 ||||| ||||||||||| || || |||||| | ||| | |||| ||||||| || Sbjct 12743 AACCCCATTGACTGGGCTGCTATCGAGCTGACCAAGACCACGGACAATGCGTACCTG-TT 12685 Query 5443 GGCAATGCCC-GTGGCACCCTGACGCCGACCCTGTGGGGTCTGCCGGTGGTTGCCACCCA 5501 ||| |||| ||| | |||| ||||||||||| | || ||||| ||||| || Sbjct 12684 CGCATCGCCCACCGGCCAGATCGCGCCCACCCTGTGGGGCCGCCCCGTGGTCGCCACGCA 12625 Query 5502 GGCTATGGCTCCGGGCGAATTCTTGGTTGGTGCATTC 5538 || |||| | ||| ||| |||| ||||||||| Sbjct 12624 AGCCATGGACGCAAACGACTTCCTGGTCGGTGCATTC 12588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142334359166788