Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4491 132 1e-25 seq98 95.1 3e-14 >seq4491 Length=604133 Score = 132 bits (146), Expect = 1e-25 Identities = 324/480 (68%), Gaps = 12/480 (3%) Strand=Plus/Plus Query 297244 GATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGA 297303 |||||| ||| |||| | | || || || || |||||||| || ||||| || || Sbjct 524820 GATGTCGCGTGGGTTGTGATTCGGAATCTTTGTGGACCAACCTGTGCCGATACCTTCCGT 524879 Query 297304 ACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACC 297363 ||||| |||| | | || |||| |||| ||| | |||||||| || | Sbjct 524880 TCCATTGACCAACACCATGGGGATAATGGGCAGATACCATAAGGGTTCGATTTTCTGGTT 524939 Query 297364 GTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTG 297423 || |||||| |||||| ||| ||| ||||||| | ||| | | |||||| Sbjct 524940 ATCGTCATACTGATATTCCAGTAGAGGATCGTCCAACGGGTGGAAGATCAACCGAGTCAA 524999 Query 297424 AGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAA-TC 297482 || || | |||||||| || || | ||| || ||||||||| || |||| | Sbjct 525000 CGGAGACAACATGGTGAAAATGTAACGAGGACTGGCACTGTCCTTACCA-CCGGCAAGAC 525058 Query 297483 TCGAACCGAACTGGCC-CTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATC 297540 | ||||||||| || ||| || |||| ||| |||||||| || ||||||||||||| Sbjct 525059 GAGTACCGAACTGACCACTCGGG--ACAAGCAGATTGATGTTGTTACTTCCGACATAATT 525116 Query 297541 CTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTAT 297599 || || || || || ||||| || |||||| ||| ||||| || ||||| | || Sbjct 525117 TTGAGCCAGATTGACAATGGTACCGCACAGAGACTGTTCACCATGATGGTAGGCTGACAT 525176 Query 297600 GCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGA 297659 || |||||| ||||| || || |||||||| || || | | || ||||||| Sbjct 525177 -TTCGGCAACGGAACCGGCCAATTGGGCAACCTTGACTTCACGCTTATCGTTACGCTTGA 525235 Query 297660 A--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAAT 297717 | | |||| ||| || || || ||| || |||| |||||| || | ||||||| Sbjct 525236 AGCACGTGAACATA--ACCTTTCGCTGACCTGGCTTGAGACCATCCACCATACACGGAAT 525293 >seq98 Length=5729030 Score = 95.1 bits (104), Expect = 3e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 243566 TTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCA 243625 |||||||||| | ||| || || ||||| || |||||||| || || | | | Sbjct 2603342 TTGGCATGAATTGTGACCTTTTGTCGCAGTATATTGAATTCGTGGCTGATGGACTGCTGC 2603283 Query 243626 TCGCGCTTGGTTAT-GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 ||| | ||||| || || || | ||||| | ||||| |||||| ||||||||| || Sbjct 2603282 TCGAG-TTGGTCATCGATAAGATTTACAATACGAAGAATCCCTTTAGTTTTATGGAGTTC 2603224 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 ||||||||| |||| |||||||||||||| || ||| Sbjct 2603223 ATTTCGCTTGAAGGTAAAACTAACTTCTTTGAGAAG 2603188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102812780497950