Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq888 320 6e-83 >seq888 Length=58548 Score = 320 bits (354), Expect = 6e-83 Identities = 747/1113 (67%), Gaps = 39/1113 (4%) Strand=Plus/Minus Query 51857 ATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTT 51916 ||| | |||| |||||||| | ||| | || |||| | ||||| |||||||| Sbjct 22884 ATGACCTACAGCACCTTTTCGCGCACCGACAACGACCAGCTCAAGGAGCCCATGTTCTTC 22825 Query 51917 GGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTA 51976 || ||| || ||||| || || || ||||| ||||||||| ||| ||||||||| | Sbjct 22824 GGCCAGCCGGTGAACGTGGCACGCTACGACCAGCAGAAGTACCCCATCTTCGAGAAGCTG 22765 Query 51977 ATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGT 52036 || || || || | || ||||||||||| |||||||| |||||| | | |||||||| Sbjct 22764 ATCGAAAAGCAGCTCTCCTTCTTCTGGCGCCCGGAAGAAGTAGACATCACGCAGGACCGG 22705 Query 52037 ATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTAT 52096 | ||||| ||||| || || | |||| | ||||| |||| ||| || || || Sbjct 22704 CTCGATTACCAGAACCTGCCGGACCACGAGAAGCACATCTTCATCAGCAACCTGAAATAC 22645 Query 52097 CAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTG 52156 |||| || || ||||| || ||||| || | ||||||| | || || || | ||| Sbjct 22644 CAGACGCTGCTGGACTCCATCCAGGGGCGCAGTCCCAACATGGCGTTCCTGCCGCTGGTG 22585 Query 52157 AGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCA 52216 | || || ||||||||||||| || |||||| | || ||||| || || || || Sbjct 22584 TCGCTGCCCGAGCTGGAGACGTGGATCGAGACCTGGGCGTTTTCCGAAACGATCCACTCG 22525 Query 52217 CGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAA 52276 || || || ||||||||||| || || || || | ||||| || | || || || Sbjct 22524 CGCTCGTACACCCACATCATCCGCAACATCGTCAACGACCCCTCTGTTGTGTTCGACGAC 22465 Query 52277 ATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAA 52336 ||||| ||||| || |||||| || || | | ||| ||| ||||| ||||| Sbjct 22464 ATCGTGCGCAACGAGCAGATCAAGCTGCGTGCGACGGACATTTCCTCGTATTACGACGAC 22405 Query 52337 C---TCCAGCAACTCACTGCATTATG-GCAGTTGTTCGGAGAAGGGAG-----CCAT--- 52384 | |||| | || | ||| || | |||| || || | ||| | |||| Sbjct 22404 CTGATCCA-CGACGCCATGCTGTACGCGCAGCTG---GGCGCCGGGCGGCACACCATCAA 22349 Query 52385 --GC--TGGTCATGAAATTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCAT 52440 || | || ||||| | || |||| ||||||||||| |||| | ||||| || Sbjct 22348 CGGCCACGTGCACGAAATCAACGTGTATGAGCTGAAGAAGAAGATGTACCTGTGCCTGAT 22289 Query 52441 GTCTATCAATGCAT--TGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCC 52498 | | || ||| | || || || |||||||| || ||||| || ||||| || ||| Sbjct 22288 GAACGTGAA--CATCCTTGAGGCGATCCGCTTCTACGTGAGCTTCGCGTGCTCGTTCGCC 22231 Query 52499 TTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGAT 52558 ||||| || || ||| | |||||||| || |||||||| || ||| | || || || || Sbjct 22230 TTCGCCGAGCGCAAGCTCATGGAAGGCAACGCCAAGATCATCCGCCTCATCGCGCGTGAC 22171 Query 52559 GAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGT---GGAAAA 52615 || || || || | || || || |||||| ||||||| || ||| || || | Sbjct 22170 GAGGCGCTGCACCTTACCGGTACGCAGCACTTGCTGAA-TATCATGC--GTTCCGGGCAG 22114 Query 52616 GATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTTC 52675 || ||||| || | | || || || ||| || || ||| ||||| Sbjct 22113 GACGACCCCGAGTTCGCCCTCATCGCGCAGGAGTGCGAGCACGAGTGCTTCGCGATGTTC 22054 Query 52676 GAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATG 52735 | | || || | || || ||| | ||||| || ||||||||| |||||||| ||| Sbjct 22053 AAGAACGCGGCGCTGCAGGAAAAGCAGTGGGCGGACTATTTGTTCCGCGATGGCTCCATG 21994 Query 52736 ATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATG 52795 || ||| | |||||| | || || || || || || || ||||| ||||| || ||| Sbjct 21993 ATCGGCCTGAACAAGGACATCCTGAGCCAGTACGTCGAGTACATCACCAATATCCGCATG 21934 Query 52796 CAAGCAGTTGGATTAGATGCTC-CATTCAAAGGTGCA-----ACTAACCCGATTCCGTGG 52849 || || || | || || | | ||| | | ||| | ||||||||||||||| Sbjct 21933 ACCGCCGTGGGGCT-GAAGCCCGCGTTCGA--GCGCATCAAGAACAACCCGATTCCGTGG 21877 Query 52850 ATTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGT 52909 || || | |||||| ||||| | || ||||| ||||| |||||| || | || Sbjct 21876 ATCAACACGTGGTTGTCCTCGGACACGGTGCAGGTGGCTCCGCAGGAAGTCGAATTGAGC 21817 Query 52910 TCCTACCTGGTCGGGCAAATTGACTCCGAAGTT 52942 ||||| || ||||| || || || | || ||| Sbjct 21816 TCCTATCTCGTCGGCCAGATCAACGCGGAGGTT 21784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169388830790258