Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq538 145 3e-30 >seq538 Length=154069 Score = 145 bits (160), Expect = 3e-30 Identities = 481/734 (66%), Gaps = 32/734 (4%) Strand=Plus/Plus Query 6560 TACCGCGAAGTGGACGCCCGGGCGCTTTGGGACGCGATCATGCGCGGGACCTGGGATTGG 6619 |||||| | ||| |||||| | || ||||| | |||||||| |||| || Sbjct 117869 TACCGCAAGGTGCGCGCCCGCGACCTGTGGGATCAGGTCATGCGCTCCACCTACGACCAC 117928 Query 6620 GCGGAGCCGGGCGTGCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGC 6679 || || |||||| | |||||| ||||| || ||| |||||||| | |||||| Sbjct 117929 GCCGAACCGGGCATCCTGTTCCTCGACCGCATGAACAAGGACAACAACCTTTACTACTGC 117988 Query 6680 GAGACCATCGCCGCCACGAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGC 6739 |||||||||| ||||| |||||||||| ||||| || || ||| ||||||| |||| Sbjct 117989 GAGACCATCGAGGCCACCAACCCCTGCGCCGAGCAGCCCCTGCCGTCCTACGGCTGCTGC 118048 Query 6740 TTGTTGGGCTCCTTCAACCTGGTCAAGTACATCTACAAGGACG---GCGCGGGCTGCTTC 6796 | ||||||| ||||||| |||| | ||||||| | | | | | Sbjct 118049 TGCCTGGGCTCGATCAACCTCACGCTGTACGT---GAAGGACGCCTTCTCCGACAAGGCC 118105 Query 6797 GCCTTCGACTGGGACCAGTACCGCGAGGACATC----CCGCAGGTGGTCCGCGCGATGGA 6852 |||||||| | | | | || || |||| || | | ||||| | | || Sbjct 118106 AGCTTCGACTTCGCCGGCTTCGGCAAGACCATCGAAACCTC----GATCCGCATGCTCGA 118161 Query 6853 CAACGTGGTGGATCGCGCGATCTATCCGCTGCCGCAGCAGAAGCAGGAAGCCAAGGACAA 6912 ||||||| | || | | || ||||| |||||| | |||||| || ||| Sbjct 118162 CAACGTGCTCGAAGCCACCCACTGGCCGCTCGAACAGCAGCACGCCGAAGCCCAGTCCAA 118221 Query 6913 GCGCCGCATGGGCCTCGGGATCACCGGCCTGGCCAACGCCGCCGAAGCC---CTGGGCCA 6969 ||||||| | |||||||| |||||||||| | ||||| ||| | ||| ||| ||| Sbjct 118222 GCGCCGCGTCGGCCTCGGCTTCACCGGCCTCGGCAACG-CGCTG--GCCATGCTGCGCC- 118277 Query 6970 TGAG-TACGGTTCGCCCGCCTTCCTCGCCTT--CGAGGCGGAGGTGCTGGACACGCTGCG 7026 || | |||| | || || ||| | | | ||| | | | | || |||| Sbjct 118278 TGCGCTACGACACCGACGAAGCCCGCGCGATGGCCACCAGGATCT-CCGAATAC-ATGCG 118335 Query 7027 GGATGAGTCCTATCTGGCCAGCGCCCACATCGCCAAGGTCAAGGGCTCCTTCCCGAAGTT 7086 || |||||||||||||| || | | ||||||||| ||| |||||||| ||| Sbjct 118336 CGACCAGTCCTATCTGGCCTCCGTCGAACTCGCCAAGGAACGCGGCGCCTTCCCGCTGTT 118395 Query 7087 CGACAAGGACAAGTACCT-TCAG--GGCCAGTTCATCAAGACCCTCCGCGAGGACGTGCG 7143 | || || ||||| || | ||| | ||| | | ||| | | || ||| Sbjct 118396 CAACGCCGATCTCTACCTCTCCGGCGGCAACTTCGCCTCGCGCCTGCCGGCCGAGGTGAA 118455 Query 7144 GGACGCCATCGCCAAATACGGCATCCGCAACTCCCACCTCACTTCCATCGCCCCGACCGG 7203 |||| ||| ||| ||||| | |||||||| ||||| ||||||||||| ||||| Sbjct 118456 GGACAAGATCCGCAAGCACGGCCTGCGCAACTCGCACCTGCTCTCCATCGCCCCCACCGG 118515 Query 7204 GACCATCAGCCTG---TGCGCCGACAACGTCAGCTCCGGGATTGAGCCGGTGTTCGCCTA 7260 |||||||||||| | ||||||||||| | | ||| || |||||| |||| | || Sbjct 118516 CACCATCAGCCTGGCCTTCGCCGACAACGCCTCCAACGGCATCGAGCCGCCGTTCTCATA 118575 Query 7261 CAGCTTCGACCGCA 7274 || || | ||||| Sbjct 118576 CACCTACACCCGCA 118589 Score = 122 bits (134), Expect = 3e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 6152 GGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGTCCTCGCGGCGACCTGATCCGCAAG 6211 |||||||| ||||||| |||||| | || |||| || |||| || | ||| Sbjct 117497 GGCGGCGGCGTCGGCTACGACTTCTCCTCCATCCGCCCCAAGGGCGCGATGGTGCGCGGC 117556 Query 6212 CTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATGCACATCTTCGACGCGATC-TGTAA 6270 ||||||| || |||||||||| || || ||||| | | |||||| || || || | Sbjct 117557 ACCCAGTCCAACGCCTCCGGCCCGGTCTCCTACATGCGCGTGTTCGAC-CGCTCCTGCGA 117615 Query 6271 GTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCAGATGGGGGTGATGCGCGTGGACCA 6330 | ||||| ||| ||||| |||||||| ||||||||||| ||| ||||| ||||| Sbjct 117616 GACCGTCGAATCCGCCGGCTCCCGCCGCGGCGCCCAGATGGGCGTGCTGCGCTGCGACCA 117675 Query 6331 TCCCGACATTGAGGAGTTCATTCACGCCAAGCAACCCGG 6369 || ||||| ||||| ||||| ||||||||| | | ||| Sbjct 117676 CCCGGACATCGAGGAATTCATCCACGCCAAGGACCACGG 117714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187589402593250