Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq622 122 1e-22 seq4491 93.3 5e-14 >seq622 Length=114055 Score = 122 bits (134), Expect = 1e-22 Identities = 234/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 8520 CGGGTGTATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAAT 8579 ||| | ||||| ||| | |||| || ||| ||| ||||| ||| | || || ||| Sbjct 6329 CGGTTCTATCAGGCAAGTACCTCAGAACTGTATGGAAAAGTCGTTGAAACACCACAGAAT 6388 Query 8580 GAGGAGACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTG 8638 ||| |||| || |||||||||||||| |||| | | | ||| | | ||| | | || Sbjct 6389 GAGAAGACGCCTTTCTATCCACGATCTCCGTATGCCTGCGCCAAGATGTACGG-ATACTG 6447 Query 8639 GCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAA 8698 | | |||| || || || ||| | || | | ||||| || |||||||| ||||| Sbjct 6448 GATTGTGATCAACTATCGGGAAGCTTACAATATGTTTGCATGTAATGGTATTCTGTTCAA 6507 Query 8699 CCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CCGAT-GGTATC 8756 |||||||| || ||||| || | |||||||||| | ||| |||| ||||| ||| | Sbjct 6508 TCACGAGTCGCCTCGTCGAGGAGAGAATTTCGTGACCAGGAAAATCACCCGATCGGTGGC 6567 Query 8757 AAACAAATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 8816 || | ||| | | | ||| ||| | | | || |||| || | || | || | Sbjct 6568 GAAAATATC--CCTGAATCAGATGGATTGCCTGGAGCTGGGCAATTTGGACTCAAAGCGT 6625 Query 8817 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 8855 |||||||| || || ||||||| || |||||||||||| Sbjct 6626 GACTGGGGTCATGCTCAGGACTACGTGGAAGCCATGTGG 6664 >seq4491 Length=604133 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 171923 AGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAG 171982 ||||| || || || ||||||| ||| |||| |||||||| ||||| || | || Sbjct 525055 AGACGAGTACCGAACTGACCACTCGGGACAAGCAGATTGATGTTGTTACTTCCGACATAA 525114 Query 171983 TCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT--TCACCGTGATGGTAGGCCG 172040 | | |||| |||||||| ||| |||| | |||||| ||||| ||||||||||| | Sbjct 525115 TTTTGAGCCAGATTGACAATGGTA-CCGC-ACAGAGACTGTTCACCATGATGGTAGGCTG 525172 Query 172041 ACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGT 172100 || | || || || | | ||||| || || ||||| | ||| ||| ||| | Sbjct 525173 ACATTTCGGCAACGGAACCGGCCAATTGGGCAACCTTGACTTCACGCTTATCGTTACGCT 525232 Query 172101 GGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCAT 172152 |||||||| |||| ||||||| ||| |||||||| || || |||| Sbjct 525233 TGAAGCACGTGAACATAACCTTTCGCTGACCTGGCTTGAGACCATCCACCAT 525284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597318079861560