Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4280 176 5e-39 seq251 116 4e-21 seq986 109 5e-19 seq4622 100 3e-16 seq100 95.1 1e-14 >seq4280 Length=912600 Score = 176 bits (194), Expect = 5e-39 Identities = 556/849 (65%), Gaps = 17/849 (2%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCA--GAACTACTGTATTGCACAATTTCTGCGC 154644 ||||| | ||| ||||| |||||||| || | | | ||||| |||||||| | || Sbjct 356842 GACGCTAGGTTACAAACAGCAATTTCATCCTTGGAGGA--GTATTCAACAATTTCGGTGC 356785 Query 154645 ACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGT 154704 | | || ||| ||||| || | ||| | |||||| ||| ||||||| || | Sbjct 356784 AAAGGTTTGAGCACTTGATGGTTCCGATGTTCTGCTGATTACTTTTCCTGTTGCAAGCAT 356725 Query 154705 CTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAA--A 154762 | || |||| |||||||| || ||||||||||||| || || || ||| || | Sbjct 356724 CCTTATACAGCATGTACGGAACACCGGTTTCCACTTGGGACTCGATGAT--TGCAAACCA 356667 Query 154763 CAGACTTCGCGCCTCAACTTGACAAGTAAATCG-ATTTTCGCTCTCATATTGTTCGTACA 154821 || | | | || | |||| | | | |||| || |||| || ||| | ||||| Sbjct 356666 CAAATCTTGGGCTTTCACTTTCCGAATGTATCGTCCTTCCGCT-TCGTATGATGTGTACA 356608 Query 154822 GTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCA 154881 ||||||||||||| || | ||| || | || ||||| | || ||||||| Sbjct 356607 GTTTTTCAAACTCCTCACCCCATGTGTCGGATAGCCCAGGACATTCATGAGGGCACATCA 356548 Query 154882 ATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGT 154941 | |||| |||||| | || || ||||| ||||||||||| | ||| | |||| Sbjct 356547 AGCACCAGTCTTCGTTAGCCTCCACTCGCTTCATGAACAAATCCGGAATCCAAAGCGCGT 356488 Query 154942 ACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAAT 155001 | |||| || | || ||||||||||| |||| |||||||| || || | Sbjct 356487 AGAACATGTCCCTGGCTCGGACATCTTCAGCGCCGGTGTTCTTCTTTAAATCCAGGAACT 356428 Query 155002 CATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCG---TTTTC 155058 | | | ||| | |||||||| || | ||| | ||| | || ||| || || | Sbjct 356427 CGAAAACATCGCCATGCCACGGTTCGAGATAAATGGCAAAGGCACCTGGCCGCTTGTTAC 356368 Query 155059 CTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGC 155118 |||| ||||| |||| || ||||||||||| | ||||| || || ||| Sbjct 356367 CTCCCTGATCAACGTACTTGGCAGTGTTATTGTACACCCTCAACATGGGAATCAAACCGT 356308 Query 155119 TGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAA 155178 ||| | ||||| |||||| || | | || || | ||||||||| | Sbjct 356307 TGGAAATTCCGTTCGTGCCAGCAATGTAGGTTCCCTTTGCTCTGATGCAATGAACATTCA 356248 Query 155179 CGCCCAAACCTCC-GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATT 155237 ||| | ||||| |||| |||| || || |||||| | | ||| || ||||| ||| Sbjct 356247 GGCCGATTCCTCCAGCCG-ATTTCGAAATCAACGCACACTGCTTCAAGGTGTCGTAGATT 356189 Query 155238 CCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGG 155297 || | ||||||||| || ||| ||||||| ||| || || || | |||||| | | Sbjct 356188 CCCTCGATGCTGTCGTCGCTCATGGTCAACAGGAAGCAGGACGACAGCTGAGGTCGGCAG 356129 Query 155298 CAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGT-AAACATTTTGTTGGCGGTTAAGTT 155356 | | |||||||| | || || ||| || || ||| || | | | | || || Sbjct 356128 GTGGCCGCCGCAAACATCGTTGGCGAAGCATGAGTGAAATATCTCTCCGACAG-CAAATT 356070 Query 155357 GTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAG 155416 ||| || || ||||| ||||| || || ||||| || || || || || ||||||| Sbjct 356069 GTACGTCTCAATGGCAGCGTCGATATCTTCGCCGTGGATTCCAATGGCAACCCGCATCAA 356010 Query 155417 CATGTGTTG 155425 |||||| || Sbjct 356009 CATGTGCTG 356001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 280/432 (65%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| |||| ||||| ||||||||||| || | ||||| || || | || |||||||| Sbjct 357361 GTGTACGGTTCGAATGATTCGTTGTTTCCAAGAATTTGCGCCGTCGAAGCCGTGGGCATC 357302 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| | || || || || | || || || || || || || | ||| Sbjct 357301 GGAGCCAGAAGCAGGGAATTGCGAACGCCATGCTTGGCGATCTTTTCCTTCAAGGCAGCC 357242 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 |||| ||||| || || || | ||||||||| ||||| |||| ||| ||| ||| Sbjct 357241 CAATCCCACATGTCTGTTGGCTCTTTGTTCCACATATCGTACTGCAGAACTCCCTTGCTC 357182 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310 |||||| | ||| | ||| | || | | || ||||| || || || ||| Sbjct 357181 ACCGGACATCCCGGATAGGTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCT 357122 Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTG-GCTTTGTC 154369 ||||| || ||||||| | |||||| ||||| || || | ||||| |||| || Sbjct 357121 TCTAAGGCACCATAGTAGATAGTTTCGAAGATTTG-CTGATTCAGTTTTTGAGCTTCTTC 357063 Query 154370 ACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCC 154429 || ||||| || | | || | | || |||||||| | || || | || | ||| Sbjct 357062 GCTGTCGTAAGGATAACGCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCC 357003 Query 154430 AACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATC 154489 | || | ||| | ||| ||| ||||| | || ||||| |||| || || Sbjct 357002 GATCGGGCGGTGGCGCATATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTC 356943 Query 154490 GATAATTTTATT 154501 ||| ||||| || Sbjct 356942 GATGATTTTGTT 356931 >seq251 Length=2698768 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | ||||| || || | ||| | || |||||| ||||||||||| || | Sbjct 664769 CCGCCTCTCAATCGCAGGACCAAATGCAGTGTGCTTTCTTTCTGAATGTTGTAGTCGGAA 664710 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| |||||||| ||||| | || | |||||||| || ||||| Sbjct 664709 AGGGTACGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAATCGCTGCTGATCTGGAGGG 664650 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| || || ||||||| ||| | || || | || ||| Sbjct 664649 ATTCCTTCCTTATCTTGGATCTTAGCCTTTACATTCTCGATAGTGTCGGATGGCTCAACT 664590 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||||| ||| || ||||| || ||||| Sbjct 664589 TCCAGGGTGATGGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 664543 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || ||||||| || ||| || || |||||||| || | Sbjct 663174 ACCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCGGA 663115 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| |||||| | || | ||||||||||| || || Sbjct 663114 AAGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGGTCTGGGGG 663055 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||| || || | ||||| | || || Sbjct 663054 AATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGATGGCTCGAC 662995 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | |||||| || |||| || || ||||| || ||||| Sbjct 662994 TTCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 662947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || || || || ||||||||||| | | ||| || | || Sbjct 661790 AGAACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAATCCGACAGGGTACGGCCATCC 661731 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || | |||||||| || || || ||||| || || || Sbjct 661730 TCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGGGGGATTCCCTCCTTATCC 661671 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || || || || || | || | |||| Sbjct 661670 TGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAGGGTTCGACCTCCAAGGTGATGGTC 661611 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||| | ||||| |||||||| |||||| Sbjct 661610 TTACCGGTTAGGGTTTTGACGAAAATCTGCATT 661578 >seq986 Length=4314454 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || ||||||| || |||||||| || ||||||||||| | Sbjct 1408031 ACCACCACGCAGACGAAGGACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCGGA 1407972 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || |||||||| |||||| | || || |||||||| || || || Sbjct 1407971 CAAAGTACGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCTGGTGG 1407912 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| || ||| | || || | || || Sbjct 1407911 GATGCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGGTGTCCGAAGGCTCGAC 1407852 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||| ||||| || || ||||| || ||||| Sbjct 1407851 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1407804 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || | |||| || || || ||||||||||||||||| | Sbjct 1409170 CCACCGCGTAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAT 1409111 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| ||||| || ||||| |||| || ||||| || || |||||| Sbjct 1409110 AGAGTACGACCATCTTCTAGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGAGGA 1409051 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || || ||| || ||| | || || | || || Sbjct 1409050 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACC 1408991 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||| ||||| || || ||||| || ||||| Sbjct 1408990 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1408944 >seq4622 Length=411747 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| | || | || || || || || |||||||| || | Sbjct 274364 ACCACCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 274423 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| |||||||||||||| | || | |||||||| || || || Sbjct 274424 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGG 274483 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || ||||| ||| ||| ||| | ||||| | || || Sbjct 274484 GATTCCCTCCTTGTCCTGGATTTTGGCCTTGACATTCTCGATCGTATCGGACGGTTCGAC 274543 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| || || ||||| || ||||| Sbjct 274544 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCAT 274591 >seq100 Length=1779872 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 1410465 AGCACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 1410406 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || | |||||||| || || ||||||||||| || || Sbjct 1410405 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTGTCC 1410346 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | || | |||| Sbjct 1410345 TGGATCTTGGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGGGTGATGGTC 1410286 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || | || || ||||| || ||||| || Sbjct 1410285 TTGCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 1410251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499615089871080