Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq265 268 2e-67 seq476 215 1e-51 >seq265 Length=448903 Score = 268 bits (296), Expect = 2e-67 Identities = 455/659 (69%), Gaps = 3/659 (0%) Strand=Plus/Plus Query 21297 TGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTGACCACCAG 21356 ||||| || ||||| || |||||||| ||||||||||||||| ||||| | ||| Sbjct 64466 TGGATTGGGGGCAAACGTCGCCTGGCAAAACATATCCTGCCGTTATTCCCGAAGCACACA 64525 Query 21357 TGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAA 21416 || || || ||||| ||| |||| |||||||||| ||| ||||| |||||||| Sbjct 64526 TGTTATGTCGAGCCGTTCTGCGGCGCGGCGGCGCTGTACTTTTTGAAGGCTCCCAGCAAG 64585 Query 21417 GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCAC 21476 |||||||||||||||| ||| | || | || ||| |||| || ||||| |||| Sbjct 64586 ACCGAGGTGATCAACGACATTAACGGTGAGTTAGTGAACCTGTATCGCGTGGTCAAGCAT 64645 Query 21477 CACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCG 21536 |||||||| ||||| ||||| ||||||||||||||||||||| || |||| | | Sbjct 64646 CACCTGGAAGAGTTTGTGCGGCAGTTCAAGTGGGCGCTGGTCAGCCGCCAGATTTATAAG 64705 Query 21537 TGGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGGCCGCGCGGTTCTAC 21596 ||| | || || | || || || || ||||||||||| || || |||||||| Sbjct 64706 TGGCTGCAGGCCACCCCGGAAGAAACCCTGACCGATATCCAGCGTGCAGCCCGGTTCTAT 64765 Query 21597 TACCTGCAGCAGCAGGGGTTTGGCGGGAAGGT---CAACTCGAACTTTGGCATCTCGACC 21653 ||||||||| |||| | || ||||| ||||| | || ||||| | |||||| Sbjct 64766 TACCTGCAGAAGCAAGCCTTCGGCGGCAAGGTGGCTGAGCAGACGTTTGGGGTATCGACC 64825 Query 21654 ACGTCTGGCCCTGGGCTTAACCTGCTGCGGATCGAGGAGAACCTCAGCCAGGCGCACTTG 21713 || || || | | ||||||||||| || || ||| | | ||||||| || Sbjct 64826 ACCAGTGCGCCCCGTTTCAACCTGCTGCGCATTGAAGAGGAGTTGTCGATGGCGCACCTG 64885 Query 21714 CGGCTCTCGCGCGTGTTCGTTGAGAACATGGACTGGAAAGCGGTCATGAAGCGCTACGAC 21773 ||| | || ||| | | | ||| | ||||||||| | ||| |||||| || Sbjct 64886 CGGTTATCACGCACGCTGATCGAGCATATGGACTGGGCCACCTGCATCCGGCGCTATGAT 64945 Query 21774 CGGCCGCACACGTTGCACTATCTCGACCCGCCGTATTGGGCGACCGCTGGCTATGATTGC 21833 ||||| ||||| || ||| ||||||||||||||||| || | || |||| Sbjct 64946 CGGCCCCACACCCTGTTCTACTGCGACCCGCCGTATTGGGGCACGGAAGGTTATGGCGTG 65005 Query 21834 GAGTTCCCGTTCGAGGAGTATGAGGCGATGGCCACGCTTGCGCGGGAGGTGCAGGGGAAG 21893 || ||| | ||| | || || |||||| |||| || || |||||||| Sbjct 65006 GACTTCGGCCTGGAGAACTACGACCTGATGGCGGCGCTGGCACGCTCACTGCAGGGGCGC 65065 Query 21894 GTGATCATCTCGATCAACGATCACCCTGACATACGCCAGGTGTTCGACGGGCTGCGGAT 21952 |||| || ||| | |||||| |||||| || ||||||| ||| | || || | ||| Sbjct 65066 ATGATTATTTCGGTGAACGATATCCCTGAGATGCGCCAGGCATTCAAGGGTCTCCAGAT 65124 >seq476 Length=182463 Score = 215 bits (238), Expect = 1e-51 Identities = 462/683 (68%), Gaps = 27/683 (4%) Strand=Plus/Plus Query 21289 TCATTCAGTGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTG 21348 |||| | |||||| |||||||||||||| ||||| || || | |||||| ||| || | Sbjct 143865 TCATCCCGTGGATCGGCGGCAAGCGCCGGCTGGCGAAGCACCTGCTGCCGCTCTTTCCCG 143924 Query 21349 ACCACCAGTGCTACGTTGAGCCCTTC-GCGG-GCGGCGCGGCGCTGTTCTTCATGAAGCA 21406 | |||||||||||||| ||||| ||| |||| ||| || ||||||||||||||||| | Sbjct 143925 AGCACCAGTGCTACGTCGAGCCGTTCTGCGGAGCG--GCCGCGCTGTTCTTCATGAAACC 143982 Query 21407 ACCCAGCAAAGTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGT 21466 || || | || ||||||||||||| |||| |||| ||||| || ||||||| || Sbjct 143983 TCCAGTGAAGGCCGAAGTGATCAACGACATCAACGGCGAGCTGGTGAATCTGTACCGCGT 144042 Query 21467 GGTGCAGCACCACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGA 21526 |||| |||| || |||||||| ||||||| ||| ||| ||| | | Sbjct 144043 GGTGGCCAACCATTTGACTGAGTTCGTTAAGCAGTTCAGATGGTCGCCGGTGAGCAGGCA 144102 Query 21527 GATGTTCGCGTGGG----AGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGG 21582 || || ||||| || || ||| | | | | || |||||||| ||||| | Sbjct 144103 AATCTTTAAGTGGGCCGTAGCCGCCGAAGTA-GCGGGC---CTTACGGATATTCAGCGCG 144158 Query 21583 CCGCGCGGTTCTACTACCTGCAGCAGCAGGGGTTTGGCGG-------GAAGGTCAACTCG 21635 | |||||||||||||||||||| | || || |||||||| ||||| || | Sbjct 144159 CTGCGCGGTTCTACTACCTGCAACGGCTTGGCTTTGGCGGCGTCGTCGAAGGGCACC--- 144215 Query 21636 AACTTTGGCATCTCGACCACGTCTGGCCCTGGGCTTAACCTGCTGCGGATCGAGGAGAAC 21695 ||| |||| ||| || || | || |||| | ||| |||| || |||||| | Sbjct 144216 -GCTTCGGCACCTCAACAACAACGGGGGTGCGGCTGAGTCTGATGCGCATTGAGGAGGAT 144274 Query 21696 C--TCAGCCAGGCGCACTTGCGGCTCTCGCGCGTGTTCGTTGAGAACATGGACTGGAAAG 21753 | || || ||| || | || | |||| | | ||||| || | |||||| | | Sbjct 144275 CTGTCGGC--GGCACATCTTCGCTTGGCGCGGGCGACGATTGAGCACCTCGACTGGCACG 144332 Query 21754 CGGTCATGAAGCGCTACGACCGGCCGCACACGTTGCACTATCTCGACCCGCCGTATTGGG 21813 | ||| | |||||||||||||| |||||| || ||| ||| ||||| || |||| Sbjct 144333 AGTGCATCACCCGCTACGACCGGCCCCACACGCTGTTCTACTGCGATCCGCCTTACTGGG 144392 Query 21814 CGACCGCTGGCTATGATTGCGAGTTCCCGTTCGAGGAGTATGAGGCGATGGCCACGCTTG 21873 |||| || || | |||||| | | ||||| || ||||||| ||| | Sbjct 144393 GCACCGAAGGGTACGGCGTGGAGTTCGGACTGGGTGAGTACGACCGGATGGCCGAGCTGG 144452 Query 21874 CGCGGGAGGTGCAGGGGAAGGTGATCATCTCGATCAACGATCACCCTGACATACGCCAGG 21933 | ||| | | |||| | || | |||||| | || || || || || || | | Sbjct 144453 CCCGGACGATCAAGGGCCGGATGGTGATCTCGGTGAATGACATTCCCGAGATGCGTCGCG 144512 Query 21934 TGTTCGACGGGCTGCGGATCGAG 21956 |||||||| |||||||| ||| Sbjct 144513 CCTTCGACGGCCTGCGGATGGAG 144535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125455312707438