Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq4721 318 3e-82 >seq4721 Length=367317 Score = 318 bits (352), Expect = 3e-82 Identities = 572/831 (69%), Gaps = 6/831 (1%) Strand=Plus/Plus Query 65917 CCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGG 65976 |||||||||| | | ||| ||| || |||||||||||| || || | ||||||| Sbjct 2099 CCACCGGCTCCCTGGGTCTCGACATCG-TCTCGGCATCGGCGGCCTGCCCCGCGGCCGGG 2157 Query 65977 TAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGG 66036 | ||||| ||||||||||| || || || || ||| | || | |||||| | || | Sbjct 2158 TCGTGGAAATCTACGGTCCCGAATCCTCCGGCAAGACGACCCTCACCCTCCAGGTCGTCG 2217 Query 66037 CCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 66096 || | |||||| ||| |||| |||||||| ||||||||||||||| | || ||| Sbjct 2218 CCGAGATGCAGAAGCTCGGCGGCACCGCCGCCTTCATCGACGCCGAACACGCGCTGGACG 2277 Query 66097 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 66156 |||||| | ||||||||| | ||| | | ||| || | ||||| |||| Sbjct 2278 TCACCTACGCCCAGAAGCTCGGGGTCAACATCGGCGACCTCCTGATCTCCCAGCCCGACA 2337 Query 66157 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 66216 | |||||||||||||| ||||||| ||| | || || || || | || | | Sbjct 2338 CCGGCGAGCAGGCCCTCGAGATCGCCGACATGCTGGTGCGCTCCGGTGGCGTCGACGTGG 2397 Query 66217 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 66276 |||| | ||||| || || ||||| ||| ||| || ||||||| || || || | Sbjct 2398 TCGTGATCGACTCCGTCGCCGCCCTCACCCCGAAGGCCGAAATCGAAGGCGAGATGGGCG 2457 Query 66277 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCA 66336 || || | ||||||||| |||||||||||| |||||| |||||||||| |||| || Sbjct 2458 ACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGCCA 2517 Query 66337 CGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA 66396 || |||||||||| || | | | | || ||| | || ||||||||| Sbjct 2518 ACATCAAGCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGG-- 2575 Query 66397 ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCT 66456 |||| | |||| |||||||||||||| || || || || |||||||| | Sbjct 2576 -CGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACGCCCTCAAGTTCTACGCGT 2634 Query 66457 CGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 66516 ||||||| ||||| ||||| | |||| |||| ||| | ||| |||| ||||| Sbjct 2635 CGGTGCGGATGGACATCCGCCGCATCGGCACCATCAAGAAGAACGACGAGGTGATCGGCT 2694 Query 66517 ACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGT 66576 | || || ||||| |||||||||||| | || || ||| |||| | | || Sbjct 2695 CCGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCACCGCCGTTCCGCGAAACCCTGT 2754 Query 66577 TTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTT 66636 | |||| | |||||||| |||| |||||||||| || || ||||| ||| ||| Sbjct 2755 TCGACATCCTGTACGGCGAAGGCACCTCCCGCGAGGGCGAGATCATCGACCTGGGCGTGC 2814 Query 66637 CCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCC 66696 | | || || | ||||| || ||||||| | ||||| | | |||| ||||||| Sbjct 2815 AGCACAAGTTCGTCGACAAGTCCGGCGCCTGGTACGCCTACGGCGGCGAGAAGATCGGCC 2874 Query 66697 AGGGCAAGCCCAA-GACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCC 66746 |||||||| ||| | ||| | | | || |||| ||||||| || ||||| Sbjct 2875 AGGGCAAGGACAACGCCCGCG-AATTCCTCAAGGCCAACCCGCACATCGCC 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242456342551244