Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq4690 147 2e-30 seq1768 111 1e-19 seq4573 93.3 3e-14 seq10 82.4 6e-11 >seq4690 Length=2851803 Score = 147 bits (162), Expect = 2e-30 Identities = 216/303 (71%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||| ||||| || || ||||| ||||||||| | ||| ||||||||||||||| ||| Sbjct 1069731 GCCGGATTCGGCGTTACTGCCGGTGTCCATCGGCTATGGTGCCACAAAGCCTACAAAGCC 1069672 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| | ||| | | ||| | |||| |||| | || || |||||||||||| Sbjct 1069671 AAACTACCGCTAAGGATCATTCTGATGTGCTGCTACTCGATTGCCGGCCAGAACACCATC 1069612 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||||| ||||||| | |||| ||||||||||| || || ||||| ||| || Sbjct 1069611 TACGACTGGGTGCGCGATCACCGCATTCATCACAAGTACTCGGAGACGGACGG-CGATCC 1069553 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||| ||| | ||| | || ||| || | ||||||| || ||||| ||| || ||| | Sbjct 1069552 ACATAACTCGAACCGAGGCTTCCTGTACGCGCACGTCGGGTGGCTTATGCTGCGAAAGCA 1069493 Query 108579 CCCCGACGTGATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGT 108638 ||| || ||| | || ||| || |||||||| ||||| | |||||||| Sbjct 1069492 CCCGGAATGCATCAAGAAAGGCCGACTCATCGACATGACTGACATCACCAGTGATCCGGT 1069433 Query 108639 GGT 108641 || Sbjct 1069432 AGT 1069430 >seq1768 Length=1637354 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||| |||| ||||||||| |||||| |||| || ||||||| | | || ||| Sbjct 832750 CAGAACAGCATCTACGAGTGGGTGCGGGATCACCGGGTCCATCACAAGTTCACCGATACG 832809 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 ||||| || ||||||||||| |||| |||| ||||||||| | || ||||| ||| Sbjct 832810 GATGCCGATCCGCACAACGCCAAGCGGGGATTCTTCTTCTCGCACATCGGCTGGCTGATG 832869 Query 108568 ATGACCAAGGACCCCGACGTG 108588 |||| ||| |||| |||||| Sbjct 832870 ATGAAGAAGCACCCGGACGTG 832890 >seq4573 Length=2864490 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 108859 GAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTG 108918 || |||||| |||||| | || || |||||||||| |||||||||||||| |||||| Sbjct 2817195 GAGAACAAAACGGTGGCCACATTCGCCTTCGGCGAGGGCTGGCACAACTACCATCACGTG 2817136 Query 108919 TTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||||| ||||||||| | ||||| |||| ||| || Sbjct 2817135 TTCCCCTGGGACTACAAGACTGCCGAACTGGGCAACTAC 2817097 >seq10 Length=2410060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 165/245 (67%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||| || ||||| || | || | ||||| | ||||| ||| ||| ||||| ||| Sbjct 1222717 GCCGGTTTTGGTGTCACCGGTGGAGCGCATCGTTTATGGACACACCGAGCTTACAAAGCC 1222658 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||||| | | || || | |||| || |||| || ||||||| | Sbjct 1222657 AAGCTTCCGTTGCGAATCATCTTGATGTGCTGCTACTGCATGGCCGGTCAGAACAGTTTG 1222598 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCA 108519 | ||||| | |||||| | | || ||||||||||| || || |||||||| Sbjct 1222597 TACGATTGGGTCCGGGATCACCGAATCCATCACAAGTACTCCGAAACCGATGCCGACCCG 1222538 Query 108520 CACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 |||||| | ||| |||| |||| ||| | ||||| || ||||| ||| ||| ||| || Sbjct 1222537 CACAACTCGAACCGGGGTTTCTTCTTCGCCCACGTTGGTTGGCTGATGCTGAGAAAGCAC 1222478 Query 108580 CCCGA 108584 || || Sbjct 1222477 CCGGA 1222473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381750666364008