Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq2015 138 4e-28 >seq2015 Length=8975 Score = 138 bits (152), Expect = 4e-28 Identities = 615/950 (65%), Gaps = 43/950 (5%) Strand=Plus/Minus Query 52305 CCTTTTAACATCCGGATGGTCCGGGAGACGGCGGACAGCACCT-CGGACCAGCTGCAGAA 52363 || ||||| ||| || |||| || | || | ||||||||| | | || | |||| Sbjct 8503 CCGTTTAATATCAGGGTGGTACGTAACACTCCAGACAGCACCAGCAGTAAAGTCG-AGAA 8445 Query 52364 TAAGACGCTCTGGTCGTCATACACCGAAATCATCGATGTGAAACAGTGCTACCCGAACAC 52423 ||| || || ||||| || |||||||||||||| |||| ||||||| || || Sbjct 8444 TAAAACCCTGTGGTCCAGCTATACCGAAATCATCGACAGCAAACTCAGCTACCCAAATAC 8385 Query 52424 GGCCATTGTGGGGCTGCAGGTGGATGCGGAGCAGTTTGGTGGCCAGCAGATGACGGTGAA 52483 || | || ||||| | || | ||||||| || || | | || || Sbjct 8384 CGCGCTGGTAGGGCTCTCTTTTGACTCTTCGCAGTTTCAGGGGGTGCCAAAGC--GT-AA 8328 Query 52484 CTACCATATCCGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCAC 52543 ||| | || || || | || ||| | || || |||||| ||||||| ||||| Sbjct 8327 CTATCTGATTCGCGGCCTGATGATCAAAGTCCCCAGCAACTATACGCCGGAAACCCGCAC 8268 Query 52544 GTACAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTG 52603 ||||| || || ||||| |||||| | || || | || || |||||||| ||| Sbjct 8267 TTACAGTGGGATGTGGGATGGCAGCTTCAAGATTGCCTGGAGTAATAACCCGGCGTGGAT 8208 Query 52604 CCTGTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGG-GCGGCGG 52662 | | | || || ||| || ||| || ||| | || |||||||||||| | || Sbjct 8207 CTTCTACGATCTGGTGATGAACGAGCGTTATGGCCTAGGGAAACGCCTGGGGAGTTTTGG 8148 Query 52663 ATGTGGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATG 52722 |||| |||||||||| ||||| ||||||||| || ||||| ||||||| || | Sbjct 8147 CTGTG-ACAAGTGGGCCATGTATAGCATTGCGCAATATTGCGATGTGATGGTCGACGACG 8089 Query 52723 GTTTCGGGGGCACAGAGCCGCGGATGACCTTTAA-TGCGTACCTGTCAC--AACAGCGTA 52779 | ||||| || ||| ||||| ||||| | ||| ||| || | |||| | | ||| Sbjct 8088 GCTTCGGTAACAAAGAACCGCGTATGACTTGTAACTGC-TA--TATCACCGATCGTCGTC 8032 Query 52780 AGGCGTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCGCTGT---ATGCCGGTATGGA 52836 |||||| || || | | || |||| || |||| | || ||||| || ||| Sbjct 8031 AGGCGTATGAGGTGGTGAACGA--TCTG-GCGTCGATCTTCCGTGCCATGCCAGTGTGGG 7975 Query 52837 ACGGCCAGACGCTGACGTTCGTTCAGGA-CAGCCCGTCGGATGTGGTGTGGCCGTACACC 52895 | ||| | | ||| | || ||||| | |||| | ||| ||| |||| || ||| Sbjct 7974 ATGGCATGCAGATGAGCTGTGTGCAGGATCGGCCCAGC-GATCCGGTCTGGCGTTATACC 7916 Query 52896 AACAGTGATGTGGTGGTGGATGATAACGGCGTGGGGTTTC-GCTACAGCTTCAGCGCCCT 52954 ||| | |||||||||| | ||||| | || | |||||||| Sbjct 7915 AAC---GCCAACGTGGTGGATG----------GCAGTTTCAGTTATCAATCCAGCGCCCA 7869 Query 52955 GAAGGACCGCCACACGGCGGTGGAGGTGAATTACACCGA-CCCGCAGAACGGCTGGCAGA 53013 ||||| || || ||||||| | | ||| || ||| ||||| || |||||| ||| Sbjct 7868 GAAGGCACGGCATACGGCGGCGCATGTGCGCTATGTCGATCCCGC-CAATGGCTGGAAGA 7810 Query 53014 CCTCCACGGAACTGGTGGAAGACCCGGAAGCCAT-ACTG--CGCTACGGGCGCAACCTGC 53070 || | |||||| || ||| || | || | || || ||||| | |||| | Sbjct 7809 CCGCGACGGAATACGTTTCTGAC---GATGTGATGATTGCCCGTTACGGTCTCAACGTCA 7753 Query 53071 TGAAGATGGATGCGTTCGGTTGCACCAGTCGCGGTCAGGCCCACCGTGCCGGGCTGTGGG 53130 |||| ||||| ||||| || ||| ||||||||||||| || |||| | |||| Sbjct 7752 CCGAGATCGATGCCTTCGGCTGTACCTCGCGCGGTCAGGCCCGTCGCACCGGCCAGTGGA 7693 Query 53131 TGATAAAGACCGGACTGCTGGAAACGCAGACGGTGGATTTCACGCTCGGGTCACAGGGGC 53190 | | | |||| || |||||||| |||| |||| |||| ||||| | || Sbjct 7692 TCTTGCAAACCGAACGGCTGGAAAAGCAGTCGGTCAGCTTCAATGTCGGGCGCGAAGGCA 7633 Query 53191 TGCGTCACACACCCGGTGACATTATTGAAATCTGTGATAACGACTATGCC 53240 || || || || || || ||||||||| ||||||| | ||| || Sbjct 7632 TGAAACATCTGCCAGGGGATATCATTGAAATCGTTGATAACCAGTATACC 7583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198734077537516