Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq986 100 2e-16 seq4622 87.8 1e-12 seq251 87.8 1e-12 >seq986 Length=4314454 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | |||||||||||| ||||| || |||||||| || Sbjct 1408258 CCACCACGCAGACGCAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 1408199 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | || || |||||| | |||| ||| ||||| || || Sbjct 1408198 AGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408139 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || |||| || || ||| | || || Sbjct 1408138 ATACCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCGACC 1408079 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || ||||| || || |||||||| |||||| Sbjct 1408078 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATA 1408031 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | ||| |||||||| || || || |||||||| || Sbjct 1408486 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1408427 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||||| |||||| | |||| ||| ||||| || || Sbjct 1408426 AGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408367 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| ||| || | || || || || | || || Sbjct 1408366 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACC 1408307 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| ||||| || ||||| || |||||||| |||||| Sbjct 1408306 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCATA 1408259 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | ||| |||||||| || || || |||||||| || Sbjct 1408942 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1408883 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||||| |||||| | |||| ||| ||||| || || Sbjct 1408882 AGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408823 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| ||| || | || || || || | || || Sbjct 1408822 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACC 1408763 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| ||||| || ||||| || |||||||| |||||| Sbjct 1408762 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCATA 1408715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || ||||| |||||||||||| ||| | | | |||||| Sbjct 1409152 ACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGATAGAGTACGACCATCTTCT 1409093 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| || ||| | |||| ||||||||| || ||||| ||||||||||| Sbjct 1409092 AGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCCTTGTCCTGG 1409033 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || || | || || || | || ||||| || Sbjct 1409032 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCCAGAGTGATGGTCTTG 1408973 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || || |||||| Sbjct 1408972 CCAGTCAAGGTCTTCACGAAGATCTGCATA 1408943 >seq4622 Length=411747 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || ||||| || || || || |||||||| ||| Sbjct 274365 CCACCGCGCAGGCGCAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 274424 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || ||||| ||| | ||||||||||| || || || Sbjct 274425 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGGG 274484 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| |||||| || ||| | || || |||||| ||| || Sbjct 274485 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACATTCTCGATCGTATCGGACGGTTCGACC 274544 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || | ||| ||||| || || ||||| || || || || || ||||| |||| Sbjct 274545 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCATCCTTGA 274597 >seq251 Length=2698768 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||||||| || || || ||||||||||| || | | | ||||| Sbjct 662244 AACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAATCCGACAGGGTACGACCATCTTC 662185 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | ||||||||||| || || || || |||||||| || Sbjct 662184 CAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGCGGGATACCTTCCTTATCCTG 662125 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| |||| ||||||||| || || || ||||| ||||| || Sbjct 662124 GATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTT 662065 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||||||| || || || || |||||| Sbjct 662064 TCCAGTCAGAGTCTTAACGAAGATCTGCATA 662034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||| | | | || || || || ||||| | || || | |||||||||| Sbjct 659771 TGCCACCTCGGAGGCGCAGCACCAAGTGTAGCGTAGATCCCTTCTGGACGTTGTAATCG- 659713 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || | | || | ||||| | |||||||||||| | |||| |||||||| || Sbjct 659712 -GACAGGGCACGGCCATCTTCCAGCTGTTTGCCAGCGAAGATCAGGCGCTGTTGATCTGG 659654 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 || || |||||||| || || |||| || | | | || || || ||| Sbjct 659653 AGGGATACCTTCCTTATCCTCGATCTTGCCCTTGATGTTCTGGATGGTGTCTACGGCTTC 659594 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || ||||| ||||||||||| |||||||| || || || || |||||||| Sbjct 659593 AACATCCAAGGTGATGGTTTTACCGGTCAGAGTCTTCACGAAGATCTGCATATT 659540 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | ||| || || || || || |||||||| ||| ||| | | | ||| Sbjct 662018 AAAACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCT 661959 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||| || | ||||||||||| || || || || |||||||| || Sbjct 661958 TCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGCGGGATACCTTCCTTATCC 661899 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || ||| |||| ||||||||| || || || ||||| ||||| Sbjct 661898 TGGATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATGGTC 661839 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||| || ||||| || |||||| Sbjct 661838 TTTCCAGTCAAAGTCTTCACAAAGATCTGCATA 661806 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | ||| || || || || || |||||||| ||| ||| | | | ||| Sbjct 662474 AAAACAAGATGTAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCT 662415 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||| || | ||||||||||| || || || || |||||||| || Sbjct 662414 TCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGCGGGATACCTTCCTTATCC 662355 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || ||| |||| ||||||||| || || || ||||| ||||| Sbjct 662354 TGGATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATGGTC 662295 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| ||| || ||||| || |||||| Sbjct 662294 TTTCCAGTCAAAGTCTTCACAAAGATCTGCATA 662262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357371279863745