Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq476 201 3e-47 seq265 185 2e-42 seq4721 86.0 2e-12 >seq476 Length=182463 Score = 201 bits (222), Expect = 3e-47 Identities = 452/673 (67%), Gaps = 17/673 (3%) Strand=Plus/Plus Query 24791 CCAATCATTTCCTGGCCGGGCGGCAAGCGCCGCCTCCTGAAGCACCTCTATCCGCACTT- 24849 || ||||| | ||| |||||||||||||| || ||||||||| |||| ||| Sbjct 143861 CCGATCATCCCGTGGATCGGCGGCAAGCGCCGGCTGGCGAAGCACCTGCTGCCGCTCTTT 143920 Query 24850 CCCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTTATGCG 24909 ||||| | || | |||||||||||| | ||| ||| | |||||| ||| | ||| Sbjct 143921 CCCGAGC-ACCAGTGCTACGTCGAGCCGTTCTGCGGAGCGGCCGCGCTGTTCTTCATGAA 143979 Query 24910 GCCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTA 24969 || |||| || || ||| |||||||||||||||||||||||||| ||||| Sbjct 143980 ACCT---CCAGTGAAGGCCGAAGTGATCAACGACATCAACGGCGAGCTGGTGAATCTGTA 144036 Query 24970 CCGCTGCGTGCGCCACCACCTGGATGAGTTCG-TGCGCATGTTCCGCTGGTCCCTGGTCT 25028 |||| ||| | |||| || |||||||| | ||| |||| | ||||| | ||| Sbjct 144037 CCGCGTGGTGGCCAACCATTTGACTGAGTTCGTTAAGCA-GTTCAGATGGTCGCCGGTGA 144095 Query 25029 CGCGACAGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACG-----CTGACCGACAT 25083 | || || || ||||||| | ||| ||| || | || || || || Sbjct 144096 GCAGGCAAATCTTTAAGTGGGC-----CGTAGCCGCCGAAGTAGCGGGCCTTACGGATAT 144150 Query 25084 CCAGCGCGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCAGGG 25143 |||||||| ||||||||||||||||||||| ||| | || |||||| || | || Sbjct 144151 TCAGCGCGCTGCGCGGTTCTACTACCTGCAACGGCTTGGCTTTGGCGGCGTCGTCGAAGG 144210 Query 25144 GCAATCGTTCGGTGTGGTGACGGCTGGTGGGCCGCGATTGAACCTTCTGCGCATTGAAGA 25203 ||| ||||| || | ||| ||| ||| || |||||||||| || Sbjct 144211 GCACCGCTTCGGCACCTCAACAACAACGGGGGTGCGGCTGAGTCTGATGCGCATTGAGGA 144270 Query 25204 GGAACTGAGCGCGGTGCATCTTCGCCTGGCAAACACCGTAATCGAGTGCCTGCCATGGCA 25263 ||| ||| |||| ||||||||| |||| | || ||| ||| ||||| Sbjct 144271 GGATCTGTCGGCGGCACATCTTCGCTTGGCGCGGGCGACGATTGAGCACCTCGACTGGCA 144330 Query 25264 GGAGTGCGTGCGGCGCTACGATCGCCCGGGAACACTGTTCTACCTTGATCCGCCCTACTG 25323 |||||| | |||||||| || || || ||||||||| |||||||| ||||| Sbjct 144331 CGAGTGCATCACCCGCTACGACCGGCCCCACACGCTGTTCTACTGCGATCCGCCTTACTG 144390 Query 25324 GGAAACCGAGGGCTATGGCGTTGAGTTCCCGTTTGCTGAGTACGAGGCGATGGCCGAGCT 25383 || ||||| || || ||||| |||||| | | ||||||||| |||||||||||| Sbjct 144391 GGGCACCGAAGGGTACGGCGTGGAGTTCGGACTGGGTGAGTACGACCGGATGGCCGAGCT 144450 Query 25384 GATGCGCACCTCGGCTGGCCGGTTCGTGGTCTCGATCAACGACCATCCTGAGATCCGCGA 25443 | || || |||||| | ||| ||||| | || ||| ||| ||||| || Sbjct 144451 GGCCCGGACGATCAAGGGCCGGATGGTGATCTCGGTGAATGACATTCCCGAGATGCGTCG 144510 Query 25444 GGTCTTCGCCGGC 25456 | ||||| |||| Sbjct 144511 CGCCTTCGACGGC 144523 >seq265 Length=448903 Score = 185 bits (204), Expect = 2e-42 Identities = 347/506 (69%), Gaps = 7/506 (1%) Strand=Plus/Plus Query 24848 TTCCCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTTATG 24907 ||||||| ||| || || |||||| | ||| ||||| || ||| || || || Sbjct 64511 TTCCCGAAGCACACATGTTATGTCGAGCCGTTCTGCGGCGCGGCGGCGCTGTACTTTTTG 64570 Query 24908 CGGCCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTG 24967 | | ||||||| ||| |||||| |||||||||| ||||| ||| | ||| |||| Sbjct 64571 AAGGCT--CCCAGCA-AGACCGAGGTGATCAACGACATTAACGGTGAGTTAGTGAACCTG 64627 Query 24968 TACCGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGTC 25027 || ||| || || |||||||| ||||| ||||| |||| ||| | |||||| Sbjct 64628 TATCGCGTGGTCAAGCATCACCTGGAAGAGTTTGTGCGGCAGTTCAAGTGGGCGCTGGTC 64687 Query 25028 TCGCGACAGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGA--CGCTGACCGACATCC 25085 || ||||| | ||||| ||| | | || | ||| | |||||||| |||| Sbjct 64688 AGCCGCCAGATTTATAAGTGGCTGCAG--GCCACCCCGGAAGAAACCCTGACCGATATCC 64745 Query 25086 AGCGCGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCAGGGGC 25145 |||| ||||| |||||||| |||||||| |||| || ||||||||||||||| | || Sbjct 64746 AGCGTGCAGCCCGGTTCTATTACCTGCAGAAGCAAGCCTTCGGCGGCAAGGTGGCTGAGC 64805 Query 25146 AATCGTTCGGTGTGGTGACGGCTGGTGGGCCGCGATTGAACCTTCTGCGCATTGAAGAGG 25205 | |||| || || ||| | ||| ||| || || ||||| |||||||||||||||| Sbjct 64806 AGACGTTTGGGGTATCGACCACCAGTGCGCCCCGTTTCAACCTGCTGCGCATTGAAGAGG 64865 Query 25206 AACTGAGCGCGGTGCATCTTCGCCTGGCAAACACCGTAATCGAGTGCCTGCCATGGCAGG 25265 | || || ||| || || | || ||| | |||||| || ||| Sbjct 64866 AGTTGTCGATGGCGCACCTGCGGTTATCACGCACGCTGATCGAGCATATGGACTGGGCCA 64925 Query 25266 AGTGCGTGCGGCGCTACGATCGCCCGGGAACACTGTTCTACCTTGATCCGCCCTACTGGG 25325 ||| | |||||||| ||||| || || ||||||||| || ||||| || |||| Sbjct 64926 CCTGCATCCGGCGCTATGATCGGCCCCACACCCTGTTCTACTGCGACCCGCCGTATTGGG 64985 Query 25326 AAACCGAGGGCTATGGCGTTGAGTTC 25351 || || || |||||||| || ||| Sbjct 64986 GCACGGAAGGTTATGGCGTGGACTTC 65011 >seq4721 Length=367317 Score = 86.0 bits (94), Expect = 2e-12 Identities = 240/364 (66%), Gaps = 11/364 (3%) Strand=Plus/Plus Query 28566 CAGACCATCGAGGTAATCCGCCCAGACCTGCATCATCCGCACGCGCTCCTGCAGGTGCGA 28625 ||||| || || ||||||||||| |||||||||| | ||||||| ||| Sbjct 119301 CAGACGGTCCAGATAATCCGCCCATCGCTGCATCATCTCCCGCCGCTCCTTGAGGAATTT 119360 Query 28626 TGTGCGGTTGTAGGC--CCGGCCGTTGGGATCCTTCACCGCGTGAGCAAGCTGGTGCTCG 28683 || ||||||||||| || | || | ||| ||| ||| || | |||||| || Sbjct 119361 CGTCCGGTTGTAGGCAGCCCCCAGT--GCATCGGGCACGCTGTGCGCCAACTGGTGTTCA 119418 Query 28684 ATGATGTCCGGGCGGAAGTGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCGCGCGGAAG 28743 || | |||||| |||||| || | |||| ||| || || || ||| | || |||||| Sbjct 119419 ATCACGTCCGGCTTGAAGTGAAGCTCTTCGTGCAGGATCGTCCGGGCCATGGCCCGGAAG 119478 Query 28744 CCGTGGCCGGTCATC---ATCGTGCGGTCGTAACCCATGTTGCGCAGCGCTGCGGTAACG 28800 || || ||||| ||| || || |||||| |||||| ||||| || || | || Sbjct 119479 CCATGACCGGTGATCTCGGTCTTGGTGTCGTAGCCCATGCGCCGCAGGGCGGCATTCACT 119538 Query 28801 GCGTTCTCTGACATCGGGCGTTTGGAATCGCGGGCGCCAGAGAACACCCACTTGTGCCGG 28860 || || |||||| || | |||||| || | ||| || | | ||| Sbjct 119539 GCCGCATCGCTCATCGGCTTCTTCGGATCGCG---ACCGGCGAAGACGTGCACGAACCGA 119595 Query 28861 CCGGTGATCGGCTTGATGTCCTCCAGGATCTGCAGCGCCTGCCTGGACAGCGGCACCAGG 28920 || || | |||| | ||| |||||| |||| |||||| | |||||| || ||| Sbjct 119596 CCTGTCA-GGGCTCCAACTCCCGCAGGATTTGCACCGCCTGAGACGGCAGCGGAACAAGG 119654 Query 28921 TGCG 28924 |||| Sbjct 119655 TGCG 119658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128789524349266