Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4280 262 4e-65 seq251 91.5 1e-13 seq1608 89.7 5e-13 seq986 84.2 2e-11 >seq4280 Length=912600 Score = 262 bits (290), Expect = 4e-65 Identities = 961/1493 (64%), Gaps = 30/1493 (2%) Strand=Plus/Plus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAA--AACGGATATTTGaaaaaaaTCGAGGAAA 122898 || || ||||| || | ||| ||| | ||| | || |||||| || ||| | | | Sbjct 355926 TATAACTATTTCGGCTTCAAGACGCTGGAACGATCG--TATTTGCTCAAGATCAAAGGCA 355983 Query 122899 AGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCG 122958 || ||| ||||| || || ||| | ||||| || || || || | ||||| | Sbjct 355984 AGATCGTGGAACGGCCACAGCACATGTTGATGCGGGTTGCCATTGGAATCCACGGCGAAG 356043 Query 122959 ACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGA 123018 | ||||| || | || || ||| ||||| |||| | | || |||||| || || Sbjct 356044 ATATCGACGCTGCCATTGAGACGTACAATTTGCTGTCGGAGAGATATTTCACTCATGCTT 356103 Query 123019 GTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCA 123078 || || |||| || || | ||| |||||| |||| || || || || | | Sbjct 356104 CGCCAACGATGTTTGCGGCGGCCACCTGCCGACCTCAGCTGTCGTCCTGCTTCCTGTTGA 356163 Query 123079 CCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTT 123138 || || |||| ||||||||| || ||||| || || ||| | || |||||||||| Sbjct 356164 CCATGAGCGACGACAGCATCGAGGGAATCTACGACACCTTGAAGCAGTGTGCGTTGATTT 356223 Query 123139 CCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCA 123198 | |||| | || || || ||| |||| || || | | |||| |||| | || Sbjct 356224 CGAAATCGGCTGGAGGAATCGGCCTGAATGTTCATTGCATCAGAGCAAAGGGAACCTACA 356283 Query 123199 TCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC-ATGCTGCGAGTTTACAATAAC 123257 | |||| ||||||| || ||| | || ||| ||| || | || ||||||||| Sbjct 356284 TTGCTGGCACGAACGGAATTTCCAACGGTTT-GATTCCCATGTTGAGGGTGTACAATAAC 356342 Query 123258 GCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCTA 123314 | | | |||| || ||||| || ||| || ||| || | || || ||||| Sbjct 356343 ACTGCCAAGTACGTTGATCAGGGAGGTAACAAGCGGCCAGGTGCCTTTGCCATTTATCTC 356402 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAA 123374 ||||||||||| | ||||| | ||| || | ||||||| |||| || || ||| Sbjct 356403 GAACCGTGGCATGGCGATGTTTTCGAGTTCCTGGATTTAAAGAAGAACACCGGCGCTGAA 356462 Query 123375 GAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGC 123434 || |||| | || |||| ||||| | ||| | || |||||||| ||| || Sbjct 356463 GATGTCCGAGCCAGGGACATGTTCTACGCGCTTTGGATTCCGGATTTGTTCATGAAGCGA 356522 Query 123435 GTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGAC 123494 || | | ||| | |||| | ||||| || || ||||| || | |||| Sbjct 356523 GTGGAGGCTAACGAAGACTGGTGCTTGATGTGCCCTCATGAATGTCCTGGGCTATCCGAC 356582 Query 123495 GTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGA-GCGCGAAGGCAAACAGGT 123553 | || | ||||||| | ||||| | |||||| ||| ||||| | | | Sbjct 356583 ACATGGGGTGAGGAGTTTGAAAAACTGTACACATCATACGAAGCG-GAAGGACGATACAT 356641 Query 123554 TAGTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGTCGAAAC 123610 | | | || || | ||||||| ||| || ||||| | ||||| ||||| Sbjct 356642 TCGGAAAGTGAAAGCCCAAGATTTGTGG---TTTGCAATCATCGAGTCCCAAGTGGAAAC 356698 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670 ||| ||||||||||| || || || || ||||||||||||| |||||| ||| | Sbjct 356699 CGGTGTTCCGTACATGCTGTATAAGGATGCTTGCAACAGGAAAAGTAATCAGCAGAACAT 356758 Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCA 123730 ||||| || || || || |||||| |||||||| | |||||| | ||| | Sbjct 356759 CGGAACCATCAAGTGCTCAAACCTTTGCACCGAAATTGTTGAATACTCCTCCAAGGATGA 356818 Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACGGCG---C 123787 | | || || ||||| | || || || |||| | ||| || || | | Sbjct 356819 AATTGCTGTTTGTAACCTAGCGTCCATCGCATTGAACATGTTCGTGAAACCCGACAAGAC 356878 Query 123788 TTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAAT 123847 | | ||||||||| || ||| || |||||| || |||||| | |||||||| Sbjct 356879 ATATGATTTCCAAAAACTGAAAGAAGTAGCAAAAATTGCCACTAAGAATCTCAACAAAAT 356938 Query 123848 TATCGATGTTAATTTTTATCCTTTG---GAGG--AAGCGCGTTTGTCTAATTTGAAACAC 123902 ||||| ||||||| ||||| || |||| ||||| || ||| || ||| Sbjct 356939 CATCGACATTAATTTCTATCCAGTGCCAGAGGCCAAGCGA-----TCCAATATGCGCCAC 356993 Query 123903 AGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCG 123962 | ||| ||||| | || | || || ||||||| || || | || |||| || Sbjct 356994 CGCCCGATCGGAATCGGTGTCCAGGGAATGGCCGATGCCTTCATTTTGATGCGTTATCCT 357053 Query 123963 TACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGC 124022 ||||| ||||| ||||| | || ||| |||||| |||||| || || || || Sbjct 357054 TACGACAGCGAAGAAGCTCAAAAACTGAATCAGCAAATCTTCGAAACTATCTACTATGGT 357113 Query 124023 GCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGC 124082 || || || || ||||| ||| | || ||| | || | ||||||| || |||| Sbjct 357114 GCCTTAGAAGCAAGCTGTGAATTGGCCGAAAAGGAGGGTACCTACGAAACCTATCCGGGA 357173 Query 124083 AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTG 124142 | |||| |||| || || |||||||||| |||||||| || ||| | || Sbjct 357174 TGTCCGGTGAGCAAGGGAGTTCTGCAGTACGATATGTGGAACAAAGAGCCAACAGACATG 357233 Query 124143 TGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTG 124202 ||||| ||| | || || || || | | ||| || | || || || ||| | Sbjct 357234 TGGGATTGGGCTGCCTTGAAGGAAAAGATCGCCAAGCATGGCGTTCGCAATTCCCTGCTT 357293 Query 124203 GTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAG 124262 |||| ||||| ||||| | || || |||||| | |||||||||||||| ||||| Sbjct 357294 CTGGCTCCGATGCCCACGGCTTCGACGGCGCAAATTCTTGGAAACAACGAATCATTCGAA 357353 Query 124263 CCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 |||| |||| ||| | ||| ||||||||| | |||| || || || || Sbjct 357354 CCGTACACTTCCAACGTTTACAACCGACGAGTGCTGTCCGGAGAATTCCAGGT 357406 >seq251 Length=2698768 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || ||||| || || |||||| ||||| || || ||| Sbjct 663176 ATACCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCG 663117 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||| || || || || | ||||| || |||||||| || Sbjct 663116 GAAAGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGGTCTGGG 663057 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| |||||||| || || |||| ||| | || ||||| | |||| Sbjct 663056 GGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGATGGCTCG 662997 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| || || || || || || || || || || ||||| Sbjct 662996 ACTTCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 662947 >seq1608 Length=1779970 Score = 89.7 bits (98), Expect = 5e-13 Identities = 199/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 124017 TACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTAC 124076 || || || || || || ||||| ||| | || | | | || | ||||||| || Sbjct 1337065 TATGGTGCCTTAGAAGCAAGCTGTGAATTGGCCGAGAAGGAGGGTACCTACGAAACCTAT 1337006 Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136 |||| | |||| |||| || || |||||||||| |||||||| || ||| Sbjct 1337005 CCGGGATGTCCGGTGAGCAAGGGAGTTCTGCAGTACGATATGTGGAACAAAGAGCCAACA 1336946 Query 124137 AATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCG 124196 | ||||||| ||| | || || || || | | ||| || | || || || Sbjct 1336945 GACATGTGGGATTGGGCTGCCTTGAAGGAAAAGATCGCCAAGCATGGCGTTCGCAATTCC 1336886 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| | |||| ||||| ||||| | || || |||||| | |||||||||||||| Sbjct 1336885 CTGCTCCTGGCTCCGATGCCCACGGCTTCGACGGCGCAAATTCTTGGAAACAACGAATCA 1336826 Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 ||||| |||| |||| ||| | ||| ||||||||| | ||||||| || || || Sbjct 1336825 TTCGAACCGTACACTTCCAACGTTTACAACCGACGAGTGCTGTCCGGCGAATTCCAGGT 1336767 >seq986 Length=4314454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || ||||| || ||||| || || || Sbjct 1408261 ATACCACCACGCAGACGCAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTC- 1408203 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| | | | || || | || || || ||| | |||| ||||| || || | Sbjct 1408202 -TGACAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGTTGATCTG 1408144 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || ||||| || || || ||||| || | ||| | ||||||||||| || Sbjct 1408143 GAGGGATACCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCT 1408084 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || ||||| | || ||||| || || || || |||||||| ||||| Sbjct 1408083 CGACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 1408032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451976322759720