Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq888 140 3e-28 >seq888 Length=58548 Score = 140 bits (154), Expect = 3e-28 Identities = 280/410 (68%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 139687 ATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTT 139746 ||| ||||| || || || || | ||| ||||||||||| || ||||| || ||||| Sbjct 24157 ATTGATCTGCACACCATAGTCCAAATGGCGAATGCGGTTTTCCTCCACACCGCGGTTGTT 24216 Query 139747 CTTTAACACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGTCGCCGC 139806 ||| | ||| | ||| ||| | || | ||||| | ||||| | || || ||||| Sbjct 24217 CTTGAGCACCAGCAGCGATTCCACTTCCAGGTGCCACAGGGGGTAGAACAGCGTGGCCGC 24276 Query 139807 CCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTTCCAGAA 139866 ||| || || | ||||| || ||||| ||||| ||||| | ||| || || |||| Sbjct 24277 CCCTCCCCGCACACCGCCCTGCGAGCAGGACTTGACGGCAGCCTGGAACATCTTGAAGAA 24336 Query 139867 TGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCTTCCGCGCGAA 139925 || | ||| || || | |||| || || ||| || | | || | || || | Sbjct 24337 GGGCAGGCAGCCCGTGTGCTGCGCTTCGCCGCCCCGGAT-TTCGCTGCCCACGGCACGGA 24395 Query 139926 TCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTA-ATATACTTGATGATTGCATTT 139984 | ||| | ||||| ||||| ||||| ||| ||| | | ||||||| ||| || | Sbjct 24396 TACGGCCGCCATTGATGCCGATGCCAGCGCGC-TGCGACACGTACTTGACGATGGCGCTG 24454 Query 139985 GCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACACGAACTAAAT 140044 | || |||||||||| | || ||| || | |||||||| ||| ||||| || || Sbjct 24455 GTGGTGGCGTTGATGCCATCCAGGCTGTCGTCGCATTCGATCAGCACGCACGAGCTGAAC 24514 Query 140045 TGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGAT 140094 ||||| | || || ||||| || | |||||| || ||||| || || || Sbjct 24515 TGGCGCATGGGCGTGCGCACGCCGGACATAATGGGGGTAGGCAGCGAAAT 24564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532377941594160