Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq622 125 9e-24 seq4491 93.3 5e-14 >seq622 Length=114055 Score = 125 bits (138), Expect = 9e-24 Identities = 235/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 10435 CGGGTGTATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAAT 10494 ||| | ||||| ||| | |||| || ||| ||| ||||| ||| | ||||| ||| Sbjct 6329 CGGTTCTATCAGGCAAGTACCTCAGAACTGTATGGAAAAGTCGTTGAAACACCACAGAAT 6388 Query 10495 GAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTG 10553 ||| ||||||| |||||||||||||| |||| | | | ||| | | ||| | | || Sbjct 6389 GAGAAGACGCCTTTCTATCCACGATCTCCGTATGCCTGCGCCAAGATGTACGG-ATACTG 6447 Query 10554 GCTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAA 10613 | | |||| || ||||| ||| | || | | |||| || |||||||| ||||| Sbjct 6448 GATTGTGATCAACTATCGGGAAGCTTACAATATGTTTGCATGTAATGGTATTCTGTTCAA 6507 Query 10614 CCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CCGAT-GGTATC 10671 |||||||| || ||||| || | |||||||||| | ||| |||| ||||| ||| | Sbjct 6508 TCACGAGTCGCCTCGTCGAGGAGAGAATTTCGTGACCAGGAAAATCACCCGATCGGTGGC 6567 Query 10672 AAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 10731 || | ||| | | ||| ||| | | | || |||| || | || | || | Sbjct 6568 GAAAATATC--CCTGAATCAGATGGATTGCCTGGAGCTGGGCAATTTGGACTCAAAGCGT 6625 Query 10732 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 10770 |||||||| || || ||||||| || |||||||||||| Sbjct 6626 GACTGGGGTCATGCTCAGGACTACGTGGAAGCCATGTGG 6664 >seq4491 Length=604133 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 175943 AGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAG 176002 ||||| || || || ||||||| || |||| |||||||| ||||| || | ||| Sbjct 525055 AGACGAGTACCGAACTGACCACTCGGGACAAGCAGATTGATGTTGTTACTTCCGACATAA 525114 Query 176003 TCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT--TCACCGTGATGGTAGGCCG 176060 | | |||| |||||||| ||| |||| | |||||| ||||| ||||||||||| | Sbjct 525115 TTTTGAGCCAGATTGACAATGGTA-CCGC-ACAGAGACTGTTCACCATGATGGTAGGCTG 525172 Query 176061 ACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGT 176120 || | || || || | | ||||| || || ||||| | ||| ||| ||| | Sbjct 525173 ACATTTCGGCAACGGAACCGGCCAATTGGGCAACCTTGACTTCACGCTTATCGTTACGCT 525232 Query 176121 GGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCAT 176172 |||||||| |||| ||||||| ||| |||||||| || || |||| Sbjct 525233 TGAAGCACGTGAACATAACCTTTCGCTGACCTGGCTTGAGACCATCCACCAT 525284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613470719328120