Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4280 132 8e-26 seq1608 98.7 2e-15 >seq4280 Length=912600 Score = 132 bits (146), Expect = 8e-26 Identities = 248/362 (69%), Gaps = 2/362 (1%) Strand=Plus/Minus Query 203837 GTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||||||||| |||||||| || || || || || || | ||| ||| || ||||| Sbjct 359654 GTCTTGTCCACAGTGAACTGGATAGCATTGACCGCGGGTTTTGTTCGCAGGTAATACATT 359595 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 |||||||| || ||| | | ||||||||| | ||| || || | ||||||| |||| Sbjct 359594 CCGGTCTTCAGTCCCATTTTCCACCCGTAGAAGTGAATCGAGGTAAGTTTGCCGTAGTTG 359535 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||| ||||||||| | || || || |||||||||| | ||||| || Sbjct 359534 GGCTCAGCCACGTGAATGTTGAACGATTGCGACTGATCGATGAAAGCACCACGATCGGCT 359475 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| ||||| |||| || || |||||||| || ||| | | || | | || Sbjct 359474 GCCATCTTGATGCAACTCTTGACGGAGATTTCCCACACGGTTTTGTATAGATCGCGGATG 359415 Query 204077 TGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 || || || | |||| | | || || ||| || ||||||| || || | || | | Sbjct 359414 TGCTGCGGGATTTCTT-CGATGTTCTGGATTGATCCGTTGTTTGCAATAATTCGGTTTTT 359356 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | || || |||||| ||| | | | || ||| | |||||| |||||| || Sbjct 359355 CATGTCGTCATCCCACAAATCCAGCTCGGTGAGATCCTTTAGCAGGTGATGGTTGACAAT 359296 Query 204196 CT 204197 || Sbjct 359295 CT 359294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || |||||||||||||| | |||| || | | |||| ||| | |||||||| | Sbjct 357404 CTGGAATTCTCCGGACAGCACTCGTCGGTTGTAAACGTTGGAAGTGTACGGTTCGAATGA 357345 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||| || | ||| || || || ||||||||||| |||||||| |||||||| Sbjct 357344 TTCGTTGTTTCCAAGAATTTGCGCCGTCGAAGCCGTGGGCATCGGAGCCAGAAGCAGGGA 357285 Query 204316 GTTGCGCACACC 204327 ||||| || || Sbjct 357284 ATTGCGAACGCC 357273 >seq1608 Length=1779970 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || ||||||||||| | |||| || | | |||| ||| | |||||||| | Sbjct 1336769 CTGGAATTCGCCGGACAGCACTCGTCGGTTGTAAACGTTGGAAGTGTACGGTTCGAATGA 1336828 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||| || | ||| || || || ||||||||||| ||||||||||||||||| Sbjct 1336829 TTCGTTGTTTCCAAGAATTTGCGCCGTCGAAGCCGTGGGCATCGGAGCCAGGAGCAGGGA 1336888 Query 204316 GTTGCGCACACC 204327 ||||| || || Sbjct 1336889 ATTGCGAACGCC 1336900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795107918083920