Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq251 98.7 7e-16 seq986 86.0 4e-12 >seq251 Length=2698768 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||| ||| | ||||||||| || || ||||| || || | | Sbjct 663857 CCTCCACGAAGACGCAGAACCAGATGAAGAGTGCTTTCCTTCTGGATATTGTAGTCCGAC 663798 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||| ||| || ||| | || || |||||||||||||| | || Sbjct 663797 AGAGTGCGGCCATCTTCCAGTTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 663738 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| |||| | | | ||||||| || || Sbjct 663737 ATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATGGTGTCTGATGGCTCGACT 663678 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || | ||| || |||||||||||||| Sbjct 663677 TCCAAGGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 663631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||||| ||| ||||| |||||||||| ||||||||||| || || || || |||| Sbjct 664769 CCGCCTCTCAATCGCAGGACCAAATGCAGTGTGCTTTCTTTCTGAATGTTGTAGTCGG-- 664712 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| |||| || || ||| | || || || ||||||||||| | | Sbjct 664711 AAAGGGTACGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAATCGCTGCTGATCTGGAG 664652 Query 39611 GTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 | | ||||| || || | || || || || ||| || ||||| | || Sbjct 664651 GGATTCCTTCCTTATCTTGGATCTTAGCCTTTACATTCTCGATA--GTGTCGGATGGCTC 664594 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| || || || ||||| || | ||| || |||||||||||||| Sbjct 664593 AACTTCCAGGGTGATGGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 664543 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||| ||||| ||||||||| || || ||||| || || | | Sbjct 664541 CCTCCACGAAGACGCAGAACCAGATGCAGAGTGCTTTCCTTCTGGATATTGTAGTCCGAC 664482 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||| ||||| ||| |||| || |||||||||||||| | || Sbjct 664481 AGAGTGCGGCCATCCTCCAGCTGTTTACCGGCAAAGATCAAACGCTGCTGATCTGGAGGG 664422 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || || || | | | | ||||| | || || Sbjct 664421 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATGGTGTCAGAAGGCTCAACT 664362 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || || || | ||| || |||||||||||||| Sbjct 664361 TCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 664315 >seq986 Length=4314454 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||| ||| | || |||||| || || || ||||||| | Sbjct 1408030 CCACCACGCAGACGAAGGACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCGGAC 1407971 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | || || ||| |||| || | |||||||||||| | || Sbjct 1407970 AAAGTACGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 1407911 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || || |||| || | | ||||| | || || Sbjct 1407910 ATGCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGGTGTCCGAAGGCTCGACC 1407851 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || || || || || || || |||||||||||||| Sbjct 1407850 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1407804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347349460921781