Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4280 127 3e-24 seq4491 93.3 5e-14 >seq4280 Length=912600 Score = 127 bits (140), Expect = 3e-24 Identities = 366/561 (65%), Gaps = 9/561 (2%) Strand=Plus/Plus Query 112095 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 112154 |||| ||| || |||||||| ||| | ||||||||| |||| |||| | | | ||| Sbjct 356484 TTCTACGCGCTTTGGATTCCGGATTTGTTCATGAAGCGAGTGGAGGCTAACGAAGACTGG 356543 Query 112155 TCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAA 112214 | | | || || | | || || || ||||| | |||||||||||||||| Sbjct 356544 TGCTTGATGTGCCCTCATGAATGTCCTGGGCTATCCGACACATGGGGTGAGGAGTTTGAA 356603 Query 112215 GCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGAT 112274 || |||||| ||||| | ||| | || | | || ||| ||| ||| Sbjct 356604 AAACTGTACACATCATACGAAGCGGAAGGACGATACATTCGGAAAGTGAAAGCCCAAGAT 356663 Query 112275 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAA 112334 ||||| || || || |||| ||| || || ||| || || ||||| || || Sbjct 356664 TTGTGGTTTGCAATCATCGAGTCCCAAGTGGAAACCGGTGTTCCGTACATGCTGTATAAG 356723 Query 112335 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTC 112394 || || || ||| || |||||||| |||| | || |||||| | || ||||| Sbjct 356724 GATGCTTGCAACAGGAAAAGTAATCAGCAGAACATCGGAACCATCAAGTGCTCAAACCTT 356783 Query 112395 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCA 112454 || || ||||| | |||| | ||| ||||| | ||||| |||||||| || || Sbjct 356784 TGCACCGAAATTGTTGAATACTCCTCCAAGGATGAAATTGCTGTTTGTAACCTAGCGTCC 356843 Query 112455 ATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCAC 112514 ||||| | || || ||| | || || ||||||| ||||| ||||||| | Sbjct 356844 ATCGCATTGAACATGTTCGTGAAACCCGA---CAAGACATATGATTTCCAAAAACTGAAA 356900 Query 112515 GAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCC 112574 ||||| | |||| || ||| || || || |||| | | || || | ||||| || || Sbjct 356901 GAAGTAGCAAAAATTGCCACTAAGAATCTCAACAAAATCATCGACATTAATTTCTATCCA 356960 Query 112575 GT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAA 112631 || ||| | || ||| |||||| | ||||| || || || |||||||||| Sbjct 356961 GTGCCAGAGGCCAAGCG---ATCCAATATGCGCCACCGCCCGATCGGAATCGGTGTCCAG 357017 Query 112632 GGTCTCGCGGATGTATTCATT 112652 || | || |||| |||||| Sbjct 357018 GGAATGGCCGATGCCTTCATT 357038 >seq4491 Length=604133 Score = 93.3 bits (102), Expect = 5e-14 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080 ||||||||||| ||||| ||||| |||||||||| ||| |||| |||||||| ||| Sbjct 525040 TCCTTACCACCGGCAAGACGAGTACCGAACTGACCACTCGGGACAAGCAGATTGATGTTG 525099 Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGAC--TTCAC 176138 || || | || | | |||| |||||||| || |||| | |||||| ||||| Sbjct 525100 TTACTTCCGACATAATTTTGAGCCAGATTGACAATGGT-ACCGC-ACAGAGACTGTTCAC 525157 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 | || ||||| || | | || || || | | ||||| || || || || | ||| Sbjct 525158 CATGATGGTAGGCTGACATTTCGGCAACGGAACCGGCCAATTGGGCAACCTTGACTTCAC 525217 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 ||| || | ||| || | | |||||||||| || || ||||||||||||| Sbjct 525218 GCTTATCGTTACGCTTGAAGCACGTGAACATAACCTTTCGCTGACCTGGCTTGAGACCAT 525277 Query 176259 CCGCCAT 176265 || |||| Sbjct 525278 CCACCAT 525284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620705489105040