Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4280 141 1e-28 seq4491 84.2 3e-11 >seq4280 Length=912600 Score = 141 bits (156), Expect = 1e-28 Identities = 424/651 (65%), Gaps = 9/651 (1%) Strand=Plus/Minus Query 106096 CCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGA 106155 ||||||||| | || || || || | | | ||| | ||| | | || || |||| Sbjct 357212 CCACATATCGTACTGCAGAACTCCCTTGCTCACCGGACATCCCGGATAGGTTTCGTAGGT 357153 Query 106156 ACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAA 106215 ||| | ||| |||||||||||||| || || | || | | || || ||||| || Sbjct 357152 ACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATAGTAGATAGTTTCGAA 357093 Query 106216 GATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAA 106275 ||| | ||||| | | ||||| || || | | || || |||||| || Sbjct 357092 GATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGGATAACGCATCAAAATGAA 357033 Query 106276 TACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCG 106335 |||| || | || || ||||| | || || || | ||| |||||||| || ||| Sbjct 357032 GGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCGCATATTGGA---TCG 356976 Query 106336 CGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 106392 | | ||| || ||||| ||||| |||| |||| | ||| ||||| || || | Sbjct 356975 CTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAGATTCTTAGTGGC 356916 Query 106393 AATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA 106452 ||| |||| | ||| | ||||||| ||||| | || | ||| | || || | Sbjct 356915 AATTTTTGCTACTTCTTTCAGTTTTTGGAAATCATATGT-CTTGTCGGGT--TTCACGAA 356859 Query 106453 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 106512 | | | ||||| || || | || |||||||| | |||||||| | ||| || Sbjct 356858 CATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCTTGGAGGAGTATTC 356799 Query 106513 TAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | |||||| || || | ||| || | ||| || || || | |||| || ||||| || Sbjct 356798 AACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTTCTGCTGATTACTTTT 356739 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 ||||||| |||||||| || |||||||| || || || ||| || |||| || Sbjct 356738 CCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTCCACTTGGGACTCGAT 356679 Query 106633 AATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTA 106692 ||||| ||||| ||| |||| || | || ||||| ||||| ||||| Sbjct 356678 GATTGCAAACCACAAATCTTGGGCTTTCACTTTCCGAATGTATCGTCCTTCCGCTTCGTA 356619 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 106743 |||||| || |||||||||||||||| | |||||| || || || Sbjct 356618 TGATGTGTACAGTTTTTCAAACTCCTCACCCCATGTGTCGGATAGCCCAGG 356568 >seq4491 Length=604133 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/250 (68%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 168471 TCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTG 168530 ||||||||||| ||||| ||||| || ||||||| ||| |||| || || |||||| Sbjct 525040 TCCTTACCACCGGCAAGACGAGTACCGAACTGACCACTCGGGACAAGCAGATTGATGTTG 525099 Query 168531 TTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAG-GATACTTCACC 168589 || || || | | |||| || ||||| || |||| || || |||||| Sbjct 525100 TTACTTCCGACATAATTTTGAGCCAGATTGACAATGGTA-CCGCACAGAGACTGTTCACC 525158 Query 168590 ATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATC 168649 ||| ||||| || ||| | || || || | | |||| ||| || ||||| | |||| Sbjct 525159 ATGATGGTAGGCTGACATTTCGGCAACGGAACCGGCCAATTGGGCAACCTTGACTTCACG 525218 Query 168650 CTTGAGATTCTTATG---GAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706 ||| || ||| | |||||| | |||| || || | ||| ||||||||||| Sbjct 525219 CTT---ATCGTTACGCTTGAAGCACGTGAACATAACCTTTCGCTGACCTGGCTTGAGACC 525275 Query 168707 ATCCGCCATA 168716 |||| ||||| Sbjct 525276 ATCCACCATA 525285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589945718266680