Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3299 89.7 6e-13 seq365 89.7 6e-13 >seq3299 Length=5804 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/173 (72%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 159611 TTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAG 159670 |||| ||| || ||||||||||||||||| | ||||| || || | || || || |||| Sbjct 1365 TTGTCCATAAGCATGGTGGTCAGGTATATTTGGATGGAGCCAACATGAACGCCCAAGTAG 1306 Query 159671 G----TCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726 | | | || || | || | ||| ||||| | |||| | || | || || Sbjct 1305 GATTGTGTCGC----CCTGGAGATTTTGGAAGCGATGTTTCTCATTTGAATCTGCACAAA 1250 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||||||||| ||||||||||||||||| || | || || ||||| || Sbjct 1249 ACATTCTGTATTCCTCATGGAGGTGGAGGTCCGGGTATGGGACCAATTGGCGT 1197 >seq365 Length=325901 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/173 (72%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 159611 TTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAG 159670 |||| ||| || ||||||||||||||||| | ||||| || || | || || || |||| Sbjct 280100 TTGTCCATAAGCATGGTGGTCAGGTATATTTGGATGGAGCCAACATGAACGCCCAAGTAG 280041 Query 159671 G----TCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726 | | | || || | || | ||| ||||| | |||| | || | || || Sbjct 280040 GATTGTGTCGC----CCTGGAGATTTTGGAAGCGATGTTTCTCATTTGAATCTGCACAAA 279985 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||||||||| ||||||||||||||||| || | || || ||||| || Sbjct 279984 ACATTCTGTATTCCTCATGGAGGTGGAGGTCCGGGTATGGGACCAATTGGCGT 279932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588016233005520