Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_015466.1 Length=62668 Score E Sequences producing significant alignments: (Bits) Value seq538 116 1e-21 >seq538 Length=154069 Score = 116 bits (128), Expect = 1e-21 Identities = 262/381 (69%), Gaps = 16/381 (4%) Strand=Plus/Minus Query 3750 CGCGTTGGCAAGGCCTGTGAACCCAAGACCCATCCGGCGCTTCGAGATGGCCTCGGCTTT 3809 ||||||| | ||||| ||||| || || || | |||||||| || ||| ||||| | Sbjct 118261 CGCGTTGCCGAGGCCGGTGAAGCCGAGGCCGACGCGGCGCTTGGACTGGGCTTCGGCGTG 118202 Query 3810 CTGCTCTTCGAGAGGATAGATTGCCCGG--TCGACCACATTGTCCATGGCGCGGA-CGAT 3866 ||||| |||||| || || || || |||| ||| ||||| | ||||| ||| Sbjct 118201 CTGCTGTTCGAGCGGCCAG--TGGGTGGCTTCGAGCACGTTGTCGAGCATGCGGATCGAG 118144 Query 3867 GTGCGGAATGTCTGCCCGATACTGAGCCCAATCGAAATA--CC--GTCGGCCAAGAGCAT 3922 || || |||| |||| | | || | ||||| || ||||| ||| || | Sbjct 118143 GTTTCGATGGTCTTGCCGAAGCCG-GCGAAGTCGAAGCTGGCCTTGTCGGAGAAG-GCGT 118086 Query 3923 CCTGCTTGATATAGCGGACCAGGTTGAGGGAACCCAGGAGACACGCACCATTCGG-CGGA 3981 ||| | | || |||| ||||||| || |||||| || ||| | | || ||| Sbjct 118085 CCTTCACG-TACAGCGTG--AGGTTGATCGAGCCCAGGCAGCA-GCAGCCGTAGGACGGC 118030 Query 3982 AGCGGTTGCTCCCCACAGGGGTTGGTCGCAGCGATCGTCTCGCAATAATAGAGGTTGTTC 4041 || || ||||| | ||||||||||| || |||| |||||||| || || |||||||| Sbjct 118029 AGGGGCTGCTCGGCGCAGGGGTTGGTGGCCTCGATGGTCTCGCAGTAGTAAAGGTTGTTG 117970 Query 4042 ATCCGGTTGATGGTGTCGATGAACAAGACGCCAGGGTCTGCGAAGTCCCAGGTGGACCGC 4101 | ||| ||| ||||| ||||| || ||| || || ||| ||| ||||||| ||| Sbjct 117969 TCCTTGTTCATGCGGTCGAGGAACAGGATGCCCGGTTCGGCGTGGTCGTAGGTGGAGCGC 117910 Query 4102 ATAACCTCTTCCCAAAGGGCG 4122 || |||| ||||| ||| || Sbjct 117909 ATGACCTGATCCCACAGGTCG 117889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200401180880033