Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4280 178 1e-39 seq4284 125 8e-24 >seq4280 Length=912600 Score = 178 bits (196), Expect = 1e-39 Identities = 949/1522 (62%), Gaps = 25/1522 (2%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| || || |||| ||| | || | || || || ||||| | ||| Sbjct 357403 TGGAATTCTCCGGACAGCACTCGTCGGTTGTAAACGTTGGAAGTGTACGGTTCGAATGAT 357344 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || || ||||||| |||||| || || || || || ||||| | || | | | | | Sbjct 357343 TCGTTGTTTCCAAGAATTTGCGCCGTCGAAGCCGTGGGCATCGGAGCCAGAAGCAGGGAA 357284 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 || | || |||| || |||| ||||||||| | |||| | Sbjct 357283 TTGCGAACGCCATGCTTGGCGATCTTTTCCTTCAAGGCAGCCCAATCCCACATGTCTGTT 357224 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567 || | ||||| | ||| || || |||| ||| || || | |||| | || ||| Sbjct 357223 GGCTCTTTGTTCCACATATCGTACTGCAGAACTCCCTTGCTCACCGGACATCCCGGATAG 357164 Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627 |||| || | ||| | || || | |||||| |||||||| || |||| ||| || Sbjct 357163 GTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATAGTAG 357104 Query 47628 ATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCT--GATGATTCAAAAGGATANN 47685 || ||||| || |||| || || || |||||| | || || ||||||| Sbjct 357103 ATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTG--TCGTAAGGATAAC 357046 Query 47686 NNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTT 47745 || | ||| |||| ||| || ||||| || || || || | || Sbjct 357045 GCATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCGCA 356986 Query 47746 TATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGAN 47805 |||| || || || ||||| | |||||| || || || || ||||| || ||| Sbjct 356985 TATTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAGAT 356926 Query 47806 NNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA---CTTGTTATTTA 47862 | | |||| | | ||| | |||||| | ||||| | Sbjct 356925 TCTTAGTGGCAATTTTTGCTACTTCTTTCAGTTTTTGGAAATCATATGTCTTGTCGGGTT 356866 Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATT 47920 | || ||| | || | ||| || || ||||| ||||| ||||| | |||| ||||| Sbjct 356865 TCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCTTGGAGG 356806 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 ||||| | | ||||| | || || || || ||||| || || | || || || Sbjct 356805 AGTAT--TCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTTCTGCTG 356748 Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 |||| | |||| || || ||||| || ||||| | || || ||||| | || Sbjct 356747 ATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTCCACTTG 356688 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA---TAACAGCTCTAGCTTTATT 48097 || || ||||| | ||| | | || | | |||| | | | || | | || Sbjct 356687 GGACTCGATGATTGCAAACCACAAA-TCTTGGGCTTTCACTTTCCGAATGTATCGTCCTT 356629 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACAT-TATC---TA 48153 | ||||||| || || | || ||||| || || || ||| | || || Sbjct 356628 --CCGCTTCGTATGATGTGTACAGTTTTTCAAACTCCTCACCC----CATGTGTCGGATA 356575 Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213 |||||||||||||| ||| |||||||| |||| || || | | | |||| ||| Sbjct 356574 GCCCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCTTCA 356515 Query 48214 TAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGC 48273 | || | ||| || |||||||| || || | ||||| | || | |||||| || Sbjct 356514 TGAACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAGCGC 356455 Query 48274 CACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 | | ||| | || | || || || || | | ||| ||||||| ||||| | ||| | Sbjct 356454 CGGTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGAGATAAA 356395 Query 48334 TTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTAT 48393 | || | ||||||| || || |||||||| ||||| | || ||||||| || || | Sbjct 356394 TGGCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGTTATTGT 356335 Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTC 48453 | || || ||||| || | | ||| || || || || || || || | ||| || ||| Sbjct 356334 ACACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGTAGGTTC 356275 Query 48454 CACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | | ||||| || | || | || || || || ||| ||| || || | | Sbjct 356274 CCTTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAATCAACG 356215 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 ||||| | || | ||| || || ||||| || || || || || |||| | || || | Sbjct 356214 CACACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCAACAGGA 356155 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | || |||| || || | || || | | ||| | ||||| || |||||| Sbjct 356154 AGCAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAGCATGAG 356095 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693 | || || |||| || | ||| || || || ||||| ||| || ||||| | Sbjct 356094 TGAAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTTCGCCGT 356035 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 | || || || | || ||||| ||||| | || || | ||| || || ||| || | Sbjct 356034 GGATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGCCTTTGA 355975 Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGT 48813 | || | | ||| ||| ||||| || || || || |||||||| || |||||| Sbjct 355974 TCTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAAAGTCCC 355915 Query 48814 TATCATTAATAATTGATGAATT 48835 ||| | ||| || | ||||| Sbjct 355914 GATCGTAAATGATAGCCGAATT 355893 >seq4284 Length=891408 Score = 125 bits (138), Expect = 8e-24 Identities = 268/398 (67%), Gaps = 2/398 (1%) Strand=Plus/Minus Query 18787 AGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTAT 18845 || |||||||| || || |||| |||||| || | ||| | ||||||||||| || | Sbjct 85542 AGCAGTCTATCAGCCACGAATTCAATATACTGCGA-CATAAGGTCACAATTCATGCCAAG 85484 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 | | ||| || || || | || || || || ||||| || ||||| || || Sbjct 85483 CAGGTCAACCGGAAGGGCTTTCGTCAGGAACTCCTGTTCGATCAGGACTGCTTCGCGGAT 85424 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 ||| | || | |||| || | || |||| ||| ||||| | ||| || Sbjct 85423 AATCTCGATCACACGTTCTTGTGATGGTTTCTGTACCAGATATTTGAACATAAGACAAGC 85364 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||| || || || || ||||| | |||||||| || || ||||||| ||||| Sbjct 85363 AAAGTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGG 85304 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||||||||| | || || ||||| || || || || || |||| |||||| ||||| Sbjct 85303 CATCAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACC 85244 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || || || || || || | | |||||| | | || | || | |||||| Sbjct 85243 TTCCACGGCGGCGAAGGCTACGACGCGTTCTCCGAAGTTGGCCTTTTTGCTTGAAATCCA 85184 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA 19183 |||| |||||| ||||| ||||| || ||||| |||| Sbjct 85183 GTTCAATGCCCAGTCAGCTTTCTTCTTCACACAGGGCA 85146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 19242 TATCAATAAACTG----TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGT 19297 ||||||||| | | |||||||| || | |||||| || || || |||||||||| Sbjct 84826 TATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGAAATCCGT 84767 Query 19298 AAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCAT 19357 | || || | ||||| || | ||| || || | || | ||| || | || || | Sbjct 84766 AGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTCTCGT 84707 Query 19358 TAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCAT 19417 | || || ||||| ||| ||||| || || | |||||| || || || || || Sbjct 84706 TCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTCTCGC 84647 Query 19418 CTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCC 19477 | || | | | | |||||| | ||||||||| | ||| ||||| || ||||||| Sbjct 84646 CGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACTGTCC 84587 Query 19478 AAAAAGAAGCCTCTGC 19493 | ||||| |||||||| Sbjct 84586 AGAAAGATGCCTCTGC 84571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562075375605480