Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq1398 134 3e-27 >seq1398 Length=15916 Score = 134 bits (148), Expect = 3e-27 Identities = 200/279 (72%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 4430 CGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAG 4489 ||||| |||||| | ||||||||| || ||||| | || || || |||||| | Sbjct 13175 CGTGACCTGCTGAATTGGGGCCGCACCACCTCGAACGCCATCGAGTACGTCCGTGAACTG 13116 Query 4490 GTGTTTACCAATAACGCCGACGTGGTGGCAGAGAAA--GCACTGAAGCCAGAATCGGATA 4547 |||| || || |||||| | |||||| || ||| ||| ||||| | || |||| Sbjct 13115 CTGTTCACGAACAACGCCAATGTGGTG--AGCGAACTGGCAACCAAGCCTCAGTCCGATA 13058 Query 4548 TCACCTTC-AGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCATCA 4606 |||| ||| ||| | |||| |||| ||||||||| |||||| | | || || Sbjct 13057 TCACGTTCGAGCTGG-AGTCCGCACCCGTGGCGACCATCGCCCACTGGATTCGCGCTTCC 12999 Query 4607 CGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATGTAC 4666 |||||| ||| ||| || || ||||| ||||| ||||| || |||||| |||||| Sbjct 12998 AAGCAGGTGCTGGCTGACGCCCCCATGCTGCAGTCGTACATCGACGGCCGCCTGATGTAC 12939 Query 4667 GGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGC 4705 |||||| |||||||||||| ||||||||||| ||| Sbjct 12938 GGCCTGAAGCTGAAGGAAGAGCAGCAGCTGCTGAAGGGC 12900 Score = 80.6 bits (88), Expect = 6e-11 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 2938 TTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCAACGAGCTGGGGATCGGGC 2997 ||||| || ||||| ||| | |||||| | |||||| || ||||||||||| | ||| Sbjct 14780 TTTGGTGTGCCGCCGCACATGGTCGGCCATTCCGAGAAGTCTACGAGCTGGGGCACCGGC 14721 Query 2998 ATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAGCC 3041 ||||||||||||| | ||||||||| | ||| |||| ||| Sbjct 14720 ATCGAGCAGCAGATGATTGGCTTCCTGACCTTCACGCTGCGGCC 14677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117186979806782