Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq888 340 3e-88 >seq888 Length=58548 Score = 340 bits (376), Expect = 3e-88 Identities = 720/1061 (68%), Gaps = 25/1061 (2%) Strand=Plus/Plus Query 207855 ACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACC 207914 || || | || |||||| || || || || || | ||| |||||||| ||||| ||| Sbjct 21785 ACCTCCGCGTTGATCTGGCCGACGAGATAGGAGCTCAATTCGACTTCCTGCGGAGCCACC 21844 Query 207915 TGAACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTT--- 207971 || || |||| | || ||| | ||| ||||| ||||| ||||| ||| | Sbjct 21845 TGCACCGTGTCCGAGGACAACCACGTGTTGATCCACGGAATCGGGTTGTTCTTGATGCGC 21904 Query 207972 TTGAATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATAC 208031 | ||| | | | || || | || ||| ||||| ||||| |||||||| || ||| Sbjct 21905 TCGAACGCGGGCTTCAGCCCCACGGCGGTCATGCGGATATTGGTGATGTACTCGACGTAC 21964 Query 208032 TGGCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCC 208091 |||| ||||| || |||||||| |||||||| || ||||| ||||| |||||| ||| Sbjct 21965 TGGCTCAGGATGTCCTTGTTCAGGCCGATCATGGAGCCATCGCGGAACAAATAGTCCGCC 22024 Query 208092 CACTCTTTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTC- 208150 |||| ||||| ||| | || | |||||| || | |||| || ||||| Sbjct 22025 CACTGCTTTTCCTGCAGCGCCGCGTTCTTGAACATCGCGAAGCACTCGTGCTCGCACTCC 22084 Query 208151 TGCTGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTG 208210 ||| || || || | ||| || || || | || || ||| | || | | ||| Sbjct 22085 TGC-GCGATGAGGGCGAACTCGGGGTCGTCCTGCCCGGAACGCATGATATTCAGCAAGTG 22143 Query 208211 CTGAGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTT 208270 ||| ||||| | ||| || || |||||||| ||||| | ||||||||| ||||| Sbjct 22144 CTGCGTACCGGTAAGGTGCAGCGCCTCGTCACGCGCGATGAGGCGGATGATCTTGGCGTT 22203 Query 208271 ACCTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACG 208330 |||||||| ||||| || ||||| || ||||| ||||| |||||| |||||||| || Sbjct 22204 GCCTTCCATGAGCTTGCGCTCGGCGAAGGCGAACGAGCACGCGAAGCTCACGTAGAAGCG 22263 Query 208331 AATAGCTTCAAGTGAGTTGA--TAGATTGCAGAGCCAGGTACAGTGCTTTCTTAA----- 208383 || || ||||| ||| | | || ||| |||||||| ||||| | Sbjct 22264 GATCGCCTCAAGGATGTTCACGTTCAT--CAGGCACAGGTACATCTTCTTCTTCAGCTCA 22321 Query 208384 TAGCACGAAGATTAACATTAACCTTCTCGCCATTGACTACGTGGTCACCCAGA-CCCAGG 208442 || |||| |||| | | || | ||| |||| ||| | ||| | ||||| Sbjct 22322 TA-CACGTTGATTT-CGTGCACGTG---GCCGTTGATGGTGTGC-CGCCCGGCGCCCAGC 22375 Query 208443 TAATAGTACTGGTTGA--TCAAGGCAATCAGTTTGTCGTAGTAATGGGAAACAGATGCAG 208500 | |||| | || || || ||||| | |||||| || ||||| | | Sbjct 22376 TGCGCGTACAGCATGGCGTCGTGG--ATCAGGTCGTCGTAATACGAGGAAATGTCCGTCG 22433 Query 208501 CACGTTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAA 208560 |||| |||||| || ||||| || | ||| || || |||| || || ||||| | Sbjct 22434 CACGCAGCTTGATCTGCTCGTTGCGCACGATGTCGTCGAACACAACAGAGGGGTCGTTGA 22493 Query 208561 CGATGTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGG 208620 ||||||| | ||||||||| || || || |||||| ||||| || || |||||| Sbjct 22494 CGATGTTGCGGATGATGTGGGTGTACGAGCGCGAGTGGATCGTTTCGGAAAACGCCCAGG 22553 Query 208621 TCTCAGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGAC 208680 |||| ||| || |||||||| || | || | ||| || || || | ||| |||| Sbjct 22554 TCTCGATCCACGTCTCCAGCTCGGGCAGCGACACCAGCGGCAGGAACGCCATGTTGGGAC 22613 Query 208681 CACGGCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTT 208740 || |||||||| |||||||| || ||||| ||||||||||| |||||||| | ||| | Sbjct 22614 TGCGCCCCTGGATGGAGTCCAGCAGCGTCTGGTATTTCAGGTTGCTGATGAAGATGTGCT 22673 Query 208741 TCTCGTGATCTGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAG 208800 ||||||| || || | | ||| || | ||||| | | || ||||||||||| | Sbjct 22674 TCTCGTGGTCCGGCAGGTTCTGGTAATCGAGCCGGTCCTGCGTGATGTCTACTTCTTCCG 22733 Query 208801 GACGCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTT 208860 | ||||||||||| || || || || || || || ||||| ||||| |||||||| | Sbjct 22734 GGCGCCAGAAGAAGGAGAGCTGCTTTTCGATCAGCTTCTCGAAGATGGGGTACTTCTGCT 22793 Query 208861 GGTCGTAACGAGAAACGTTGACGTTTTGACCCAGGAACATG 208901 ||||||| || | ||||| || || || | ||||||| Sbjct 22794 GGTCGTAGCGTGCCACGTTCACCGGCTGGCCGAAGAACATG 22834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911040224049240